SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene87909

Length: 477 nt

UniGene Fasta

>sp_v1.1_unigene87909
TCGTGACCTTGGCTGTCACTCAAAAATCAAATCTGTCTCTGGGAAGTACAGTGTTGCTCAGTGGTTTCATCATCTTGTTCCAAGGATTGCATTGCAGCCAGCATTTTTATTATTTGTGGTGGTGTGTCTGATCCAATCAGGGCGACAATGAAGAACAGTACTGCTGTTATCCAGATCGTTGCTTGTTTAGTCCTTATGGTGGGAATAGTGGGGGGTAGCCATAGTCATGGTAATGTCATGGTATCTCTGGCAGCTAAGAAATCTCACAAACTGGCCCCCACTCCAGCACCAGCACCAGCACCGGCACTAGCCAATCTGACACAACTGCTATCAGTAGCTGGGCCATTCAACACGTTATTGAGTCTCTTGGAAGCCAGTGAACTGCTTACGACTCTACAATCCCAGGCAAACAACACAGAGCAAGGTCTTACAATATTTGCACCATCTGATCCTGCATTCTCTTCTCTCTCAAAGAAA

Ace file of the UniGene sp_v1.1_unigene87909

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin domain containing protein	-	-	5.0e-07	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	unknown [Picea sitchensis]	-	-	1.78445e-18	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAS1 domain	IPR000782	-	1.78445e-18	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A936

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 110 - 276

Fln protein: MKNSTAVIQIVACLVLMVGIVGGSHSHGNVMVSLAAKKSHKLAPTPAPAPAPALANLTQLLSVAGPFNTLLSLLEASELLTTLQSQANNTEQGLTIFAPSDPAFSSLSKK

Protein Length: 111

Fln nts: TCGTGACCTTGGCTGTCACTCAAAAATCAAATCTGTCTCTGGGAAGTACAGTGTTGCTCAGTGGTTTCATCATCTTGTTCCAAGGATTGCATTGCAGCCAGCATTTTTATTATTTGTGGTGGTGTGTCTGATCCAATCAGGGCGACA_-_ATGAAGAACAGTACTGCTGTTATCCAGATCGTTGCTTGTTTAGTCCTTATGGTGGGAATAGTGGGGGGTAGCCATAGTCATGGTAATGTCATGGTATCTCTGGCAGCTAAGAAATCTCACAAACTGGCCCCCACTCCAGCACCAGCACCAGCACCGGCACTAGCCAATCTGACACAACTGCTATCAGTAGCTGGGCCATTCAACACGTTATTGAGTCTCTTGGAAGCCAGTGAACTGCTTACGACTCTACAATCCCAGGCAAACAACACAGAGCAAGGTCTTACAATATTTGCACCATCTGATCCTGCATTCTCTTCTCTCTCAAAGAAA

Fln Alignment:

sp_v1.1_unigene87909___MKNSTAVIQIVACLVLMVGIVGGSHSHGNVMVSLAAKKSHKXXXXXXXXXXXXXXXXXXXXSVAGPFNXXXXXXXXXXXXXXXQSQANNTEQGLTIFAPSDPAFSSLSKK
D5A936_______________MKNCTSVIQILACLVLMVGLVGGSHSYENAMVVLAAKKTPTLTPTPAPAPGPAFANLTDLLSVAGPFTNILSLFEGSDLMETLQSQANDRKQGPTLFAPSDLAFSPLSKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain