SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene87515

Length: 575 nt

UniGene Fasta

>sp_v1.1_unigene87515
GAGGAGTTTATGATGGATTCTGAGGCGCACGGGAGGCTTCTGAGGAGGATCCATTACTACATCGGCTACGGAGCATTGGCTGCTGATCGCGTTCTATGCCGGCCTCGGTCTGGGAGGCCTTATTACACTCGGAATTGTTACGGCGCAACAGGTCCTGTCAGGCCTTACCACAGGAGTTGCACAGCTATCACTCGGTGCAGGCGTTACACTAGCTAGGCTTCCATTTGGTTCCTCGTTTTCCTCCTTTCTTGAACCCTACATTTACTTGACCAGGGGTCGTATGTTTTGATTTCTTTAAAATAACCGTAAGTTTTGTTATGTATTCATCTGTAATAGCCTAATATTTTTTCCAATAAGAATGAGTATCTTCGGGTTGATAAATGTCCATTTTTACTGAAATATCATGAGTGAATCCGAAATGCATGTGATATGCTCTAGTCCTTCCTGATCAGTGCCTTAAATCATCATATACAGTTTGTATCAGTAATTAGGAAACTGAACACGGGATGTTGCTGAACCAAATCAAGAATTTGTTTGCAATGAATTAGATGTACGGTGTCTGCATATTGAGAACT

Ace file of the UniGene sp_v1.1_unigene87515

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rapid alkalinization factor 3 n=1 Tax=Solanum chacoense RepID=Q6TF27_SOLCH	-	-	2.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	rapid alkalinization factor 3	-	-	1.62908e-31	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rapid ALkalinization Factor	IPR008801	-	1.62908e-31	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTU3

Fln msg: your sequence is shorter than subject: 72 - 139

Fln protein: EEFMMDSEAHGRLLRRIHYYIGYGALAADRVLCRPRSGRPYYTRNCYGATGPVRPYHRSCTAITRCRRYTS*

Protein Length: 73

Fln nts: GAGGAGTTTATGATGGATTCTGAGGCGCACGGGAGGCTTCTGAGGAGGATCCATTACTACATCGGCTACGGAGCATTGGCTGCTGATCGCGTTCTATGCCGGCCTCGGTCTGGGAGGCCTTATTACACTCGGAATTGTTACGGCGCAACAGGTCCTGTCAGGCCTTACCACAGGAGTTGCACAGCTATCACTCGGTGCAGGCGTTACACTAGCTAG___GCTTCCATTTGGTTCCTCGTTTTCCTCCTTTCTTGAACCCTACATTTACTTGACCAGGGGTCGTATGTTTTGATTTCTTTAAAATAACCGTAAGTTTTGTTATGTATTCATCTGTAATAGCCTAATATTTTTTCCAATAAGAATGAGTATCTTCGGGTTGATAAATGTCCATTTTTACTGAAATATCATGAGTGAATCCGAAATGCATGTGATATGCTCTAGTCCTTCCTGATCAGTGCCTTAAATCATCATATACAGTTTGTATCAGTAATTAGGAAACTGAACACGGGATGTTGCTGAACCAAATCAAGAATTTGTTTGCAATGAATTAGATGTACGGTGTCTGCATATTGAGAACT

Fln Alignment:

sp_v1.1_unigene87515___EEFMMDSEAHGRLLRRIHYYIGYGALAADRVLCRPRSGRPYYTRNCYGATGPVRPYHRSCTAITRCRRYTS
A9NTU3_______________EEFMMDSEAHGRLLRRVRYYISYGALAANRVPCRPRSGRSYYTRNCYAATGPVRPYHRSCTAITRCKRYTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain