SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene86889

Length: 555 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene86889
GTGACCTTGGCTGTCACTCATGTTCTAATATCGGTAACGACGTTCATGGAGGATACGAATTCGTGTATCAAGGCCAGACTGCTTCTGCTTACAACACGGCCAACTGCAAAGGCGTTGCTCAGACCCGTTTTTCTGGCAGTGTTAATCAAGCTTGCAGCGGTTTTGGTTGGAAGAGTTTTTTCATCCAGTGCTAAGTGCTGCATGTGATAACTTTATATTATTATTATCATACTACTAGGCACGTCTAAGTAGTTGGCGTTGTCCCAAATAAAGCTTGAGAGTGTCCATTCATGGCGTGGCGCTGTTTGTATGGCATCATCTATCTCAAGAATGGTAGATATAGGTACATAATGTTTTGCAATTTTCACCGGTCCATATGATGTCTGTTATTTATTTCTTTGTCTAACTTTATTTCGTTAATACGTAATGTTTTTTGTGCACTGATATTACATATTTTTCTACTCTCAAGTACTGTTATGCCAAGGATCTGTCCATATCTAACATCTTAGTCCAGGTTAATTTTAATTTCTTGTCAACTTCACTAAGCACAAGACC

Ace file of the UniGene sp_v1.1_unigene86889 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Antimicrobial peptide 1 n=1 Tax=Pinus monticola RepID=AMP1_PINMO	-	-	1.0e-23	87%
FL-Next	tr=Antimicrobial peptide 1; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Blast2go	antimicrobial peptide 1	-	-	1.00372e-27	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IWD8

Fln msg: your sequence is shorter than subject: 64 - 105

Fln protein: DLGCHSCSNIGNDVHGGYEFVYQGQTASAYNTANCKGVAQTRFSGSVNQACSGFGWKSFFIQC*

Protein Length: 65

Fln nts: GTGACCTTGGCTGTCACTCATGTTCTAATATCGGTAACGACGTTCATGGAGGATACGAATTCGTGTATCAAGGCCAGACTGCTTCTGCTTACAACACGGCCAACTGCAAAGGCGTTGCTCAGACCCGTTTTTCTGGCAGTGTTAATCAAGCTTGCAGCGGTTTTGGTTGGAAGAGTTTTTTCATCCAGTGCTAA___GTGCTGCATGTGATAACTTTATATTATTATTATCATACTACTAGGCACGTCTAAGTAGTTGGCGTTGTCCCAAATAAAGCTTGAGAGTGTCCATTCATGGCGTGGCGCTGTTTGTATGGCATCATCTATCTCAAGAATGGTAGATATAGGTACATAATGTTTTGCAATTTTCACCGGTCCATATGATGTCTGTTATTTATTTCTTTGTCTAACTTTATTTCGTTAATACGTAATGTTTTTTGTGCACTGATATTACATATTTTTCTACTCTCAAGTACTGTTATGCCAAGGATCTGTCCATATCTAACATCTTAGTCCAGGTTAATTTTAATTTCTTGTCAACTTCACTAAGCACAAGACC

Fln Alignment:

sp_v1.1_unigene86889___CSNIGNDVHGGYEFVYQGQTASAYNTANCKGVAQTRFSGSVNQACSGFGWKSFFIQC
D9IWD8_______________CSNIGNDVHGGYEFVYQGQTASAYNTANCKGVAQTRFSGSVNQACSGFGWKSFFIQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain