SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene85852

Length: 360 nt

UniGene Fasta

>sp_v1.1_unigene85852
TCGTGACCTTGGCTGTCACTCAAAGGGTGCTCGAGAATAACAGAGTCCGGGCTTAAGAAGATCATGGAAGATTGCAGGGAACTGAGTCAGATAAATTTAAAAAACTGTAAATGTGTCGATGTCGAAGCTTTAGCTTGGATGGTTTTCTATAGGCCCTCCCTGAGAAAGCTCGTGCCTCCTTCATCATGTGTGTCCGAGGGACAGAAGGCACTGCTGTTGCGACATGGATGCAAACTCTTCAGTTGCAGTAACAGTTAATTGACATTCATAAACAGTTATATCCGACCTAGCTTTGGGCGTATCCCTGGAGTTCAAATGTTTGCTAAGATGAAGGGTACCTCTTGATAGTGCAATTCAAGA

Ace file of the UniGene sp_v1.1_unigene85852

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine rich repeat-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZA86_PICSI	-	-	1.0e-36	87%
FL-Next	tr=F-box/LRR-repeat protein, putative; Ricinus communis (Castor bean).	-	-	0.0	43%
Blast2go	leucine rich repeat-like protein	-	-	1.90055e-36	95%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SMV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 86 - 578

Fln protein: S*PWLSLKGCSRITESGLKKIMEDCRELSQINLKNCKCVDVEALAWMVFYRPSLRKLVPPSSCVSEGQKALLLRHGCKLFSCSNS*

Protein Length: 87

Fln nts: TCGTGACCTTGGCTGTCACTCAAAGGGTGCTCGAGAATAACAGAGTCCGGGCTTAAGAAGATCATGGAAGATTGCAGGGAACTGAGTCAGATAAATTTAAAAAACTGTAAATGTGTCGATGTCGAAGCTTTAGCTTGGATGGTTTTCTATAGGCCCTCCCTGAGAAAGCTCGTGCCTCCTTCATCATGTGTGTCCGAGGGACAGAAGGCACTGCTGTTGCGACATGGATGCAAACTCTTCAGTTGCAGTAACAGTTAA___TTGACATTCATAAACAGTTATATCCGACCTAGCTTTGGGCGTATCCCTGGAGTTCAAATGTTTGCTAAGATGAAGGGTACCTCTTGATAGTGCAATTCAAGA

Fln Alignment:

sp_v1.1_unigene85852___LSLKGCSRITESGLKKIMEDCRELSQINLKNCKCVDVEALAWMVFYRPSLRKLVPPSSCV-SEGQKALLLRHGC
B9SMV8_______________LDLAGCLNVTEKGVNEVVQNCTKLREMNLKWCDNVKVDMIATMVFSRPSLRKITPPCGFIPTDKQISFFLQHGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain