SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene85817

Length: 478 nt

UniGene Fasta

>sp_v1.1_unigene85817
CGTGACCTTGGCTGTCACTCATTTGCTCGTTCCTATAACCTGTGGATGCATGAAGAACTACTCGCAGGCCAATATCTCTTACACAATAGTGAAGGACGATACTTTTTATGGGGTTTCATCTAGGAAATTTGAGAATTTGACAACATACCAAGCTGTAGAGGTTGCAAACCCTACCCTGGTACCCACAGACCTTCAAATTGGGACTATTGTCACTATTCCAATCAGATGCCAATGCCCATCAAAAGCTCAACTGGAAAGTGGAACCAAGATGCTGATAACATACGTTGTGGAGAAGGAAGATTCTCTGTCAAGTATCAGCAAGAAGTTTGGAGCAGAGCAGAAGAATTTGAAATCTCAGAATGGTAAGAATTCAACCCTAGATCCTTATTCTACAATTTTGATTCCCCTTTCCAAATTGCCTAAGCTTGCTCAAGTTCATTCATCGTCCCCATCTTCGCAGTGAGTGACAGGCCACTGA

Ace file of the UniGene sp_v1.1_unigene85817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RTG0_RICCO	-	-	3.0e-32	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	domain containing receptor-like kinase	-	-	2.73253e-43	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidoglycan-binding Lysin subgroup	IPR002482	-	2.73253e-43	67%
Blast2go	Peptidoglycan-binding lysin domain	IPR018392	-	2.73253e-43	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 393 aas, your sequence is shorter than subject: 138 - 536

Fln protein: MKNYSQANISYTIVKDDTFYGVSSRKFENLTTYQAVEVANPTLVPTDLQIGTIVTIPIRCQCPSKAQLESGTKMLITYVVEKEDSLSSISKKFGAEQKNLKSQNGKNSTLDPYSTILIPLSKLPKLAQVHSSSPSSQ*

Protein Length: 139

Fln nts: CGTGACCTTGGCTGTCACTCATTTGCTCGTTCCTATAACCTGTGGATGC_-_ATGAAGAACTACTCGCAGGCCAATATCTCTTACACAATAGTGAAGGACGATACTTTTTATGGGGTTTCATCTAGGAAATTTGAGAATTTGACAACATACCAAGCTGTAGAGGTTGCAAACCCTACCCTGGTACCCACAGACCTTCAAATTGGGACTATTGTCACTATTCCAATCAGATGCCAATGCCCATCAAAAGCTCAACTGGAAAGTGGAACCAAGATGCTGATAACATACGTTGTGGAGAAGGAAGATTCTCTGTCAAGTATCAGCAAGAAGTTTGGAGCAGAGCAGAAGAATTTGAAATCTCAGAATGGTAAGAATTCAACCCTAGATCCTTATTCTACAATTTTGATTCCCCTTTCCAAATTGCCTAAGCTTGCTCAAGTTCATTCATCGTCCCCATCTTCGCAGTGAGTGACAGGCCACTGA

Fln Alignment:

sp_v1.1_unigene85817___MKNYSQANISYTIVKDDTFYGVSSRKFENLTTYQAVEVANPTLVPTDLQIGTIVTIPIRCQCPSKAQLESGTKMLITYVVEKEDSLSSISKKFGAEQKNLKSQNGKNSTLDPYSTILIPLSKLPKLAQ
B8LQ73_______________MANYSQANVTYTIYGGDTFYLISTRKFENLTTYPAVEVTNPTLVVTNLQIGSLATIPIRCKCPSNAQVTNGTKMLITYVVHPGDTLLNISQKFGADLQNLKSLNGINSTLIPYSTLLVPVSQKPVLAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain