SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene85260

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene85260
CGTGACCTTGGCTGTCACTCAATCTTCCTAAGGGAATATCTTATTATGAATTTATGAAGAAGACTAAATATTGCCTGTGCCCAAGTGGATATGAAGTGGCCAGCCCTCGAATCGTAGAGGCAATTTACAGCGAATGTGTGCCTGTCATACTTTCCGAGCATTATGTTCTTCCCTTCAGCGACGTGCTGAATTGGGCAAGCTTCTCTGTTCAGATTCCCTTGTCCCAAATACCAAATCTCAAGACCATACTCCAATCCATCCCTGTAAATAAGTATGTCCAGATGCAAAAAAGAGTGAAGCAAGTTCAGAGACATTTTGCTATAAACCAGCCTCCAAAATCTTATGACTTGTTCCACATGATTCTTCATTCCATATGGCTCAGAAGGCTCAACATTCAGATTACCTCATAAAAGAGATCCATGATTCTTCATTCCATAGCTCGGAAGGCTCAACATTCAGAATCCAGATTGCCTCAT

Ace file of the UniGene sp_v1.1_unigene85260 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SRL1_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	85%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W4

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 136 - 420

Fln protein: *PWLSLNLPKGISYYEFMKKTKYCLCPSGYEVASPRIVEAIYSECVPVILSEHYVLPFSDVLNWASFSVQIPLSQIPNLKTILQSIPVNKYVQMQKRVKQVQRHFAINQPPKSYDLFHMILHSIWLRRLNIQITS*

Protein Length: 137

Fln nts: CGTGACCTTGGCTGTCACTCAATCTTCCTAAGGGAATATCTTATTATGAATTTATGAAGAAGACTAAATATTGCCTGTGCCCAAGTGGATATGAAGTGGCCAGCCCTCGAATCGTAGAGGCAATTTACAGCGAATGTGTGCCTGTCATACTTTCCGAGCATTATGTTCTTCCCTTCAGCGACGTGCTGAATTGGGCAAGCTTCTCTGTTCAGATTCCCTTGTCCCAAATACCAAATCTCAAGACCATACTCCAATCCATCCCTGTAAATAAGTATGTCCAGATGCAAAAAAGAGTGAAGCAAGTTCAGAGACATTTTGCTATAAACCAGCCTCCAAAATCTTATGACTTGTTCCACATGATTCTTCATTCCATATGGCTCAGAAGGCTCAACATTCAGATTACCTCATAA___AAGAGATCCATGATTCTTCATTCCATAGCTCGGAAGGCTCAACATTCAGAATCCAGATTGCCTCAT

Fln Alignment:

sp_v1.1_unigene85260___PWLSLNLPKGISYYEFMKKTKYCLCPSGYEVASPRIVEAIYSECVPVILSEHYVLPFSDVLNWASFSVQIPLSQIPNLKTILQSIPVNKYXXXXXXXXXXXRHFAI--NQPPKSYDLFHMILHSI
A9P1W4_______________PLFDISTEHPATYYEDMQRAIFCLCPLGWAPWSPRLVEGVIFGCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPNLDTILTSIPPEVILRKQRLLANPAMKQAMLFPQPAQPGDAFHQILNGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain