SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene85226

Length: 427 nt

UniGene Fasta

>sp_v1.1_unigene85226
CTCACATCTCTTGCCTCCTATCCAATGAGCCCTAGGCTGCATCCAGATATTTTTATGGGGTAAGGCTGGCTGTTCTAAACCTATTGGAGAATTCAATAGTTCAAACTATATTTGATTTTCTTAGGCCAAAGGATTTGACAAATCCCATCCATCCATAAGGTTGCAATATCCTACACCCCCACAATTCTGCATTTGGAGGATCTACAGAGGAATTGGCTGCCACTACAATTGCAAGATCAAATGTTGTCATGTATATACTTGAAATCCAGGACAGAGGGATTACAGCAAGAAGAAACATTAAATGATCTGCCAAAGGCCATGATCTGCGCAAGCATTGCAAATGTCTTGTTTTTTCCTATTGTTGATAAAGTGTATCCTTTCCAAGGAGTGTCACATGATTTTCTTTTCCAGCTGGTAAGTACTGCCT

Ace file of the UniGene sp_v1.1_unigene85226

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Inward rectifying potassium channel n=1 Tax=Cucumis melo RepID=Q0R4Q4_CUCME	-	-	7.0e-19	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	potassium channel	-	-	1.3819e-18	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetyl-CoA C-acyltransferase.	EC:2.3.1.16	-	1.3819e-18	78%

Source	KEGGs	Term	e value	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	1.3819e-18	78%
Blast2go	Fatty acid metabolism	00071	1.3819e-18	78%
Blast2go	Valine, leucine and isoleucine degradation	00280	1.3819e-18	78%
Blast2go	Geraniol degradation	00281	1.3819e-18	78%
Blast2go	Benzoate degradation	00362	1.3819e-18	78%
Blast2go	alpha-Linolenic acid metabolism	00592	1.3819e-18	78%
Blast2go	Ethylbenzene degradation	00642	1.3819e-18	78%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	1.3819e-18	78%
Blast2go	Biosynthesis of plant hormones	01070	1.3819e-18	78%
Blast2go	Metabolic pathways	01100	1.3819e-18	78%
Blast2go	Biosynthesis of secondary metabolites	01110	1.3819e-18	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	1.3819e-18	78%
Blast2go	glyoxysome organization	GO:0010111	Biological Process	1.3819e-18	78%
Blast2go	potassium ion transport	GO:0006813	Biological Process	1.3819e-18	78%
Blast2go	circadian rhythm	GO:0007623	Biological Process	1.3819e-18	78%
Blast2go	response to high light intensity	GO:0009644	Biological Process	1.3819e-18	78%
Blast2go	acetyl-CoA C-acyltransferase activity	GO:0003988	Molecular Function	1.3819e-18	78%
Blast2go	identical protein binding	GO:0042802	Molecular Function	1.3819e-18	78%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	1.3819e-18	78%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.3819e-18	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.3819e-18	78%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.3819e-18	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.3819e-18	78%
Blast2go	vacuole	GO:0005773	Cellular Component	1.3819e-18	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.3819e-18	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 235 aas, your sequence is shorter than subject: 142 - 659

Fln protein: LTSLASYPMSPRLHPDIFMG*GWLF*TYWRIQ*FKLYLIFLGQRI*QIPSIHKVAISYTPTILHLEDLQRNWLPLQLQDQMLSCIYLKSRTEGLQQEETLNDLPKAMICASIANVLFFPIVDKVYPFQGVSHDFLFQLVSTA

Protein Length: 143

Fln nts: CTCACATCTCTTGCCTCCTATCCAATGAGCCCTAGGCTGCATCCAGATATTTTTATGGGGTAAGGCTGGCTGTTCTAAACCTATTGGAGAATTCAATAGTTCAAACTATATTTGATTTTCTTAGGCCAAAGGATTTGACAAATCCCATCCATCCATAAGGTTGCAATATCCTACACCCCCACAATTCTGCATTTGGAGGATCTACAGAGGAATTGGCTGCCACTACAATTGCAAGATCAAATGTTGTCATGTATATACTTGAAATCCAGGACAGAGGGATTACAGCAAGAAGAAACATTAAATGATCTGCCAAAGGCCATGATCTGCGCAAGCATTGCAAATGTCTTGTTTTTTCCTATTGTTGATAAAGTGTATCCTTTCCAAGGAGTGTCACATGATTTTCTTTTCCAGCTGGTAAGTACTGCCT

Fln Alignment:

sp_v1.1_unigene85226___RNWLPLQLQDQMLSCIYLKSRTEGLQQEETLNDLPKAMICASIANVLFFPIVDKVYPFQGVSHDFLFQLVS
B8LPV4_______________RNDLPPKLKEQILSYMCLKFRAEELQQQKVMEELPKS-IRTSISRCLFIETVETVYLFQGVSTEFILDLVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain