SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84997

Length: 449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene84997
GTCGTGACCTTGGCTGTCACTCAGCATCGGCAAGGAGATCGCCCTCAATTTAGCGGAGAAGGGAGCCAAAGTTGTGGTCCATTATTCCTCTAATCAACAGACCGCAGAGGAGGTGGTCTCCACAATCAATAACAGCTCCACTTTTTGTGTTAATGGTGTGACGGCGATTGCCAGGCTGAGATCTCCAACCAGGTTTGGAATTTCAAATGACATTTTGGCATTTTTCATGCCCTTTTGTGAGTGTCGACTTGCCCTTATCTAGAAATTCTCTTACAACTATTCTTTCATCTCAACTTCCTTTAATCTCCCTGTGAAAATGCCTTGTTTCTTTTCAGCATATGTGTTTCACCATGTCTCCACTCCCTTTAATCTCCCTCTTAAAGTGTCTTGTTTCTTCTAAAGTTAGCATATGTGTTTCCACCTAGTATACAACCATATTTTTAAGATTT

Ace file of the UniGene sp_v1.1_unigene84997 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	2.0e-10	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSE2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 87 - 264

Fln protein: S*PWLSLSIGKEIALNLAEKGAKVVVHYSSNQQTAEEVVSTINNSSTFCVNGVTAIARLRSPTRFGISNDILAFFMPFCECRLALI*

Protein Length: 88

Fln nts: GTCGTGACCTTGGCTGTCACTCAGCATCGGCAAGGAGATCGCCCTCAATTTAGCGGAGAAGGGAGCCAAAGTTGTGGTCCATTATTCCTCTAATCAACAGACCGCAGAGGAGGTGGTCTCCACAATCAATAACAGCTCCACTTTTTGTGTTAATGGTGTGACGGCGATTGCCAGGCTGAGATCTCCAACCAGGTTTGGAATTTCAAATGACATTTTGGCATTTTTCATGCCCTTTTGTGAGTGTCGACTTGCCCTTATCTAGAAATTCTCTTACAACTATTCTTTCATCTCAACTTCCTTTAATCTCCCTGTGAAAATGCCTTGTTTCTTTTCAGCATATGTGTTTCACCATGTCTCCACTCCCTTTAATCTCCCTCTTAAAGTGTCTTGTTTCTTCTAAAGTTAGCATATGTGTTTCCACCTAGTATACAACCATATTTTTAAGATTT

Fln Alignment:

sp_v1.1_unigene84997___SLSIGKEIALNLAEKGAKVVVHYSSNQQTAEEVVSTINNSSTFCVNGVTAI
A9NSE2_______________SRGIGREISLHLAEKGARVIVNYSSNQRNAEEVASLINNSSTSCGVGVRAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain