SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84849

Length: 233 nt

UniGene Fasta

>sp_v1.1_unigene84849
GGTGCAATTAGAAAGTATAGAAGTAAAATTTGAATCAGAAGATAAAGCTATAACTTTATTATGCTCGTTCCCTGAGTCATGGGATCATTTTGTTACTTCTATAAGTCTTAGTATATCAAAAACCCTTGAATTTGATGATGTTGTTGGAGCTTTGTTGTCCGAAGAGACAAGGAAGAGGTCAAATTCAGAAACCTCTACATCAGAAGCAATGATGGCCAAGGTCGTTCTCCCAT

Ace file of the UniGene sp_v1.1_unigene84849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QUM8_ORYSJ	-	-	5.0e-07	38%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Distance to subject end: 1122 aas, your sequence is shorter than subject: 77 - 1328

Fln protein: VQLESIEVKFESEDKAITLLCSFPESWDHFVTSISLSISKTLEFDDVVGALLSEETRKRSNSETSTSEAMMAKVVLP

Protein Length: 78

Fln nts: GGTGCAATTAGAAAGTATAGAAGTAAAATTTGAATCAGAAGATAAAGCTATAACTTTATTATGCTCGTTCCCTGAGTCATGGGATCATTTTGTTACTTCTATAAGTCTTAGTATATCAAAAACCCTTGAATTTGATGATGTTGTTGGAGCTTTGTTGTCCGAAGAGACAAGGAAGAGGTCAAATTCAGAAACCTCTACATCAGAAGCAATGATGGCCAAGGTCGTTCTCCCAT

Fln Alignment:

sp_v1.1_unigene84849___QLESIEVKFESEDKAITLLCSFPESWDHFVTSISLSISKTLEFDDVVGA-LLSEETRKRSNSE
P10978_______________QLANLGVKIEEEDKAILLLNSLPSSYDNLATTI-LHGKTTIELKDVTSALLLNEKMRKKPENQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain