SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84592

Length: 1016 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene84592

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	pentatricopeptide repeat-containing protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Separated hits, possible frame ERROR between 412 and 624, your sequence is longer than subject: 303 - 246

Fln protein: MIAGLSYSGLADEAIQLFGQMKEAGVRPNGNTFLGVLSACNRLGLVDEGQRYYESMDKDYGLLYSMQHYVCMVDLLGRAGRLEEAEQFIGKIPTKPSAMVWETLRNACKSHGNEDMEKRAAEKITELEPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW*

Protein Length: 304

Fln nts: AGATTGTTCTTCATGGAATTAT_-_ATGATTGCCGGGTTGTCATACAGTGGCCTTGCAGATGAGGCGATTCAGTTGTTTGGGCAGATGAAAGAGGCAGGTGTGAGACCGAATGGAAACACTTTCCTCGGGGTGCTTTCGGCGTGCAATCGGTTGGGACTGGTGGATGAAGGCCAGAGGTACTATGAATCGATGGATAAAGACTACGGACTCCTTTATTCCATGCAGCACTATGTGTGCATGGTTGATCTTCTGGGTCGAGCCGGGCGGTTGGAGGAAGCAGAGCAGTTCATCGGTAAGATACCAACAAAGCCAAGTGCTATGGTTTGGGAGACACTGCGCAACGCCTGCAAGAGTCACGGGAATGAAGATATGGAGAAACGGGCTGCGGAGAAGATCACCGAGTTGGAGCCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTAGCTGGCCAGATGAAGGAAGCAGGATATGTACCTGACACAAAGTACGTCTTGCATGATGTGGACGAGGCACAGAAAGAAATAGCTCTGATGCATCACAGTGAGAGGCTGGCCATAGCTTACGGGCTTATCAGCACTCCACCCGGCACAACACTGAGGATAATTAAAAACCTTCGAGTGTGTGGTGATTGCCACAACGCTATCAAGATCATGTCCAAGATTGTTCAGCGAGAACTTATTGTACGAGATGCAAAGCGATTTCATCATTTTAAGGATGGCAAGTGCTCCTGTGGAGATTATTGGTGA___TGCTGATTTACTTCTGCCTGGAAGGAACTTTGGAGTAGTCAGTTGTGCATCTCAATGTGTTAAGATCTCTATGTGTACCAGTTCATC

Fln Alignment:

sp_v1.1_unigene84592___MDKDYGLLYSMQHYVCMVDLLGRAGRLEEAEQFIGKIPTKPSAMVWETLRNACKSHGNEDMEKRAAEKITELEPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAGQMKEAGYVPDTKYVLHDVDEAQKEIALMHHSERLAIAYGLISTPPGTTLRIIKNLRVCGDCHNAIKIMSKIVQRELIVRDAKRFHHFKDGKCSCGDYW
D5AAE0_______________MCRDYCIAPREVHYACMIDLLGRAGRLDEARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain