SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84545

Length: 313 nt

UniGene Fasta

>sp_v1.1_unigene84545
GACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCACGGAAAGTTTCTTCGGAGTTTCCGCTTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTACTGTCACGGTTCCCAAGCAGCCTCAGCCTAAACCTGAGGTTAGAGCCATAGAAATCTCTGGTTAGCTGAAACAAAATTAGTGGGTATGACGGTTGAGATTATGTATGGATGTTTGCCCTTCCTCCCGTTATTGTTGGTAAGGGTTTGAAGACTGACAATCAATGT

Ace file of the UniGene sp_v1.1_unigene84545

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat-shock protein, putative	-	-	1.0e-16	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	kd class i small heat shock protein	-	-	3.44768e-22	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACL4

Fln msg: your sequence is shorter than subject: 71 - 158

Fln protein: DRVLKISGERKKEEEKKTDKWHRIERSHGKFLRSFRLPENAKVDQVKATTVTVPKQPQPKPEVRAIEISG*

Protein Length: 72

Fln nts: GACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCACGGAAAGTTTCTTCGGAGTTTCCGCTTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTACTGTCACGGTTCCCAAGCAGCCTCAGCCTAAACCTGAGGTTAGAGCCATAGAAATCTCTGGTTAG___CTGAAACAAAATTAGTGGGTATGACGGTTGAGATTATGTATGGATGTTTGCCCTTCCTCCCGTTATTGTTGGTAAGGGTTTGAAGACTGACAATCAATGT

Fln Alignment:

sp_v1.1_unigene84545___DRVLKISGXXXXXXXXXTDKWHRIERSHGKFLRSFRLPENAKVDQVKAT------TVTVPKQPQPKPEVRAIEISG
D5ACL4_______________DRVLQISGERKKEKEKKNDKWHRIERSHGKFLRRFRLPENAKVDEVKATMENGVLTVTVPKQPQPKPEVRAIKISG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain