SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84544

Length: 795 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene84544

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rhomboid family protein	-	-	3.0e-34	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	rhomboid family protein	-	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX52

Fln msg: Warning!, your query overlaps and the subject is separated, and possible frame ERROR between 707 and 722, Distance to subject end: 29 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 265 - 301

Fln protein: NYIKKLNPGRQDAQKDDIPENNRSDKTRNSLTANEAESARDFFSSVNKIIKDLNLGSEVVDEWIKDLDSEVNSKLAEDNKDVPDGLVSSTDVSYNSxxxxSGLLHVAFSSWAILTFGPLVDRAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVVAIIGSWIIYLFQNREALGEEMVDSLIQKVAVASVLSVALSYLTPIDDWTHLGAACAGLIFGILICPVVPVHAPSKxxxxxxPRDGQEGFLLVNQWPDARKLFTVF

Protein Length: 266

Fln nts: AATTATATTAAGAAACTTAATCCAGGACGACAAGATGCTCAAAAGGATGATATCCCGGAGAATAATAGAAGTGACAAAACTAGAAATAGTTTAACAGCCAATGAAGCTGAATCAGCTAGAGACTTTTTTAGTAGTGTGAACAAGATAATAAAGGACTTAAACTTAGGATCTGAGGTGGTTGATGAATGGATAAAGGATTTAGATTCTGAAGTGAATTCTAAGTTGGCTGAAGACAACAAAGATGTACCTGATGGGCTTGTTTCTTCAACTGATGTATCCTACAACTCTxxxxxxxxxxxxTCTGGATTGCTGCATGTTGCTTTTAGTTCCTGGGCAATTCTCACATTCGGACCTCTGGTTGATAGAGCTTATGGATCGTTTGCATTTTGCATGATATACTTTCTTGGAGGAGTTTGTGGCAACTTAATGAGCTTCTTCCATACCCCGGATGCTACTGTAGGTGGGACGGGTCCAGTCGTTGCCATCATTGGTTCTTGGATTATATATTTATTTCAGAACCGGGAGGCACTTGGAGAAGAAATGGTAGATAGTTTGATTCAGAAAGTAGCTGTTGCTAGTGTACTAAGTGTTGCGTTGAGTTACTTGACCCCTATTGATGACTGGACACATTTGGGAGCAGCATGTGCAGGTCTCATATTTGGGATTCTCATTTGCCCTGTTGTGCCAGTTCATGCACCTTCTAAAAxxxxxxxxxxxxxxxCCCCACGTGATGGTCAAGAAGGATTTCTTTTAGTTAATCAATGGCCAGATGCTCGTAAATTATTTACAGTGTTTAC

Fln Alignment:

sp_v1.1_unigene84544___IIKDLNLGSEVVDEWIKDLDSEVNSKLAEDNKDVPDGLVSSTDVSYNSYLIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNHSGLLHVAFSSWAILTFGPLVDRAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVVAIIGSWIIYLFQNREALGEEMVDSLIQKXXXXXXXXXXXXXXTPIDDWTHLGAACAGLIFGILICPVVPVHAPSKKxxxxxPRDGQEGFLLVNQWPDARKLFTVF
A9NX52_______________MIKDLDLGSEVVDEWIKDLESEVTSKLAEDNKDILDGPVSSTDVSYNSYLIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFLHSGLLHIAFSSWALLTFGPLVDTAYGSFAFCMIYFLGGVCGNLMSFFHTPDATVGGTGPVLAIIGSWIIYLFQNREALGEEMADNLIQKVAVASVLSVALSYLTPIDDWTHLGAACAGLIFGVFICPVVPVHAPSKKxxxxxPNDSQEGFLLVSQWPDARKLFTVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain