SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84539

Length: 1893 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene84539 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lung seven transmembrane receptor [Medicago truncatula]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transmembrane receptor, eukaryota	IPR009637	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRU5

Fln msg:

Fln protein: MCEGIRSFAVKMASAWLFVVLLLVIAVNVGVEGSVHEYKDASFKESGNAYLLYGGNEGMRASIDSDQKSGSGPNNGKSYIKFENITLRRTTEAAAQHSGMEHSTGLVQAIIFEASDRDDIGGSLFGGQKAICCTPDLAKIEGCKQGEVIRRQSAGDPKWPYVLDIEFSGDEISHTLSAQSVTIPKTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE*

Protein Length: 533

Fln nts: AAGAGTCGATGTAATTCAGTGGTGGGTTGAAGGTTTTGG_-_ATGTGTGAAGGCATTCGTTCCTTCGCAGTGAAGATGGCTTCAGCTTGGCTGTTCGTGGTGCTTTTGCTGGTAATTGCAGTGAATGTGGGAGTCGAAGGGTCAGTGCACGAATACAAGGACGCTTCCTTCAAGGAGAGTGGAAACGCTTACCTGCTCTATGGAGGCAACGAGGGCATGAGAGCCTCGATTGACTCTGATCAGAAGTCTGGATCCGGCCCCAACAATGGAAAATCTTACATCAAGTTTGAAAATATTACTTTGCGGAGGACAACGGAAGCTGCTGCTCAGCATTCAGGCATGGAACACAGTACTGGACTGGTCCAGGCTATCATCTTTGAGGCATCTGATCGAGATGATATTGGTGGTTCACTATTTGGTGGCCAAAAGGCTATCTGCTGTACTCCCGACCTTGCCAAGATAGAGGGGTGCAAACAAGGCGAAGTCATTCGGCGCCAATCTGCAGGAGATCCCAAATGGCCTTATGTTTTAGATATTGAATTTAGTGGAGATGAAATTTCCCACACTTTGTCAGCACAATCAGTAACAATTCCTAAGACTGGAATGTATAACTTGTATTTTATATTTTGTGAACCTAAACTTAAAGGGCTGGTAATGACTGGAAAGACGATATGGAAAAATCCCACAGGTTATCTACCTGGGAGGATGGCACCACTAATGACCTTTTATGGTCTAATGTCCCTTGCATACCTTCTCCTTGGGATTGTTTGGTTTTCCCAGTATGCCAGATTTTGGAGAGAAATTTTACAGCTTCAGAACTGTATTACTCTTGTTATTTCTTTGGGTATGTTTGAAATGACACTGTTGTACTTTGAATACGCAAATTTCAATGCAACTGGAATCAGGTCCACAGGTATTACTATTTGGGCTGTTACATTTGGTGCTGTCAAGAGAACCATATCCCGACTCATTATCTTGGTTGTTTCAATGGGCTATGGTGTAGTAAGGCCCACTCTAGGAGGTCTTACTTCGAAGGTGCTTCTTCTGGGAGCAACATTCTTCCTGGCATCTGAGTTGCTTGATCTTGTGGAGAATGTGGGGTCCATCAATGATCTATCAGGAAAAGCCAGATTGTTTCTTGTTCTGCCAGTTGCAATTGTGGACGCTTTCATCGTTATTTGGATTTTTACTTCTTTGTCTAAAACATTGGAGAAACTTCAGGCAAGGAGGTCGCTTGCTAAGCTAGACATTTACAGGAAGTTCACTAATGCATTGGCAGTTGCTGTATTTGTTTCCGTGGCATGGATTGGATATGAGCTGTATTTCAAGGCAACTGATCCGTTCAGTGAGCGTTGGCAGAGTGCATGGGTTATAAGTGCATTTTGGCATGTTCTTTCATTTTCTTTGCTTTGTGTCATCTGTGCACTTTGGGCTCCATCTCAAAACTCCACTAGATATGCTTACTCAGATGATGTAGGAGAAGAGTTTGGTGAAGAAGAGACGATGTCTTTGACCAAGTCGTTAGCAAAGGTTGACGGTGATGAAAACTCTGCAATGCCAGAGAAGAAAGAGAGGAAAGAGACTAGCAAAGATGTTTTCAGCTTGAATGATGATACAGAAGAAGATAAAAGGGAATAG___ATTACGGCCTATTTATCGACTGCGGAAGGGTGCAGGGCAATCTAGGCATTTCATGCAGTTGACAGTTCAATGTGCAAACATGTTGCTCTTAACTGTGTTTTATTAGCATTTTCATTTCATATCATCCTAGGAGTCATTGACTGGAGATGGAAGGGTTTAGCTATTAGTTCCTTAGAACAGTAATTTATCTCCGAATTGTGCTATGAACATGAGTTATGGTTTCAAAGCTCTATTTGAGAATCTAATATTGAATTTATT

Fln Alignment:

sp_v1.1_unigene84539___MCEGIRSFAVKMASAWLFVVLLLVIAVNVGVEGSVHEYKDASFKESGNAYLLYGGNEGMRASIDSDQKSGSGPNNGKSYIKFENITLRRTTEAAAQHSGMEHSTGLVQAIIFEASDRDDIGGSLFGGQKAICCTPDLAKIEGCKQGEVIRRQSAGDPKWPYVLDIEFSGDEISHTLSAQSVTIPKTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE
C0PRU5_______________MCEGICSFALKMASASVFMVLLAVIALNVRVEGSVHEYKDASFKESGDAYLLYGGNEGMRASIDSDQKHGSGPNNGKSYIKFENITLRRTREAAAQHSGMEHRTGLVQAIIFEASDRDDIGGSLYGGRKAICCTPDLAKMEGCKQGEVIRRQSAGDPKWPHVLNIEFSGDDIATTMSAQSVTIPKTGMYNLYFIFCEPTLKGLLLDGKTIWKNPTGYLPGRMAPLMTFYGFMSLVYLLLGVIWFSQYIRFWKDVLQLQNCITLVIALGMFEMTLWYFEYANFNATGIRPMGITFWAVTFGAVKKTVARLLLLVVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDVVENVGTIDDLSGNTRLFLVLPVAILDAFLILWIFTSLSKTLEKLQARRRLAKLEIYRKFTNALAVAVIVSVAWIGYELYFKATDPFSERWQSAWIITGFWHMLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDEEEALALTTSTSVVDVD---VKQEMKERKAVNTDVFSLDEDTEEDKRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain