SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84529

Length: 528 nt

UniGene Fasta

>sp_v1.1_unigene84529
GCTGGATGGCAAAACAATTGAAGGACCAGATAAAGGCCCAACGTTCAAGCTACAGGTCACAGTTGCAAAGCCTGCAGTTAAGTCTAGGAAGCGCAATCGTGAGGAATTTCAGAAGGTTGTGGCTAATAAATCTGATGGTCAGGCAAAGACATCTGCAGATGTTACATCTTCCAAAGCATTGGAGGTTCCAACTGTGGTAGATCCATATGAAGTAGCTGTTCTATCATTGCCTACTGCTGTTACAGATCGCTTGCTCCAGATATTTCGCCAAGGTCTTGCTACTCGATATGATATTGACATTCAATGCCTTACAAGTTTGCGGGAGCTTCCTGAAGTGACAGCTGCAGCTATCCTTGAGCAGTTTGCAACAAACAACTTTGCAGATGGGCGCAACAAGAGTGCATACCTTGCTGGTTTGATTGCAAGGTATAAAGTGGACAGCTTAGCAAGTGGGAGAATCCCAATGCTACATCAAGGACAAAGTTCAAATCTGCCATCCAGAGATGCTGGGCTACTTGGGATAACCGG

Ace file of the UniGene sp_v1.1_unigene84529

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HNRNPR, HNRPR; heterogeneous nuclear ribonucleoprotein R; K13161 heterogeneous nuclear ribonucleoprotein R	-	-	9.0e-07	31%
FL-Next	tr=Putative uncharacterized protein Sb08g019140; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	45%
Blast2go	rna recognition motif family expressed	-	-	9.83686e-32	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YQD2

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 175 - 441

Fln protein: LDGKTIEGPDKGPTFKLQVTVAKPAVKSRKRNREEFQKVVANKSDGQAKTSADVTSSKALEVPTVVDPYEVAVLSLPTAVTDRLLQIFRQGLATRYDIDIQCLTSLRELPEVTAAAILEQFATNNFADGRNKSAYLAGLIARYKVDSLASGRIPMLHQGQSSNLPSRDAGLLGIT

Protein Length: 176

Fln nts: GCTGGATGGCAAAACAATTGAAGGACCAGATAAAGGCCCAACGTTCAAGCTACAGGTCACAGTTGCAAAGCCTGCAGTTAAGTCTAGGAAGCGCAATCGTGAGGAATTTCAGAAGGTTGTGGCTAATAAATCTGATGGTCAGGCAAAGACATCTGCAGATGTTACATCTTCCAAAGCATTGGAGGTTCCAACTGTGGTAGATCCATATGAAGTAGCTGTTCTATCATTGCCTACTGCTGTTACAGATCGCTTGCTCCAGATATTTCGCCAAGGTCTTGCTACTCGATATGATATTGACATTCAATGCCTTACAAGTTTGCGGGAGCTTCCTGAAGTGACAGCTGCAGCTATCCTTGAGCAGTTTGCAACAAACAACTTTGCAGATGGGCGCAACAAGAGTGCATACCTTGCTGGTTTGATTGCAAGGTATAAAGTGGACAGCTTAGCAAGTGGGAGAATCCCAATGCTACATCAAGGACAAAGTTCAAATCTGCCATCCAGAGATGCTGGGCTACTTGGGATAACCGG

Fln Alignment:

sp_v1.1_unigene84529___LDGKTIEGPDKGPTFKLQVTVAKPAVKS-RKRNREEFQKVVANKSD----------GQAKTSADVTSSKALE-VPTVVDPYEVAVLSLPTAVTDRLLQIFRQGLATRYDIDIQCLTSLRELPEVTAAAILEQFATNNFADGRNKSAYLAGLIARYKVDS
C5YQD2_______________MDGKTVRGPDRGPSFRIQVSVARPAADNDKKRSREEVRTRRSNVSGDRQDYSHGRYGHDSLDRQVKASRLSNYVGDASDPYESAVNSLPSAVKEVLLRILRLGIGTRYDIDIQCVKSLNELPESSALAVLNQFLISG-GDKRNKGYYFASLIAKHQAEA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain