SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84492

Length: 555 nt

UniGene Fasta

>sp_v1.1_unigene84492
GAAGTGGAAAGAGTTGCAGACTACGTTGGATGAATTATCTTCGTCCAAACATAAAACGAGGAAATATTTCTCCCGAAGAGGACGATCTCATAATTAGATTGCATCGTCTTCTGGGCAATCGGTGGTCACTCATAGCAGGAAGACTACCTGGTCGAACAGATAATGAAATAAAGAACTACTGGAATACTCATTTGAGAAAGAATATTGGAGCTCTGAATAGACGAGATCGGAGCGAGGCGAAAATGACTGAAGAAGACATGGGTGTTTCTCCGCGTCTCGATCTCGTCGGAGCAAATCAAATTGCTGTAAATATTGAAAATAATGTAACTGTTGCTCAGTCCTTTGATGAACAGTCGAGGGCACTGTTACAAGAAGATTTAACTATGGAAATGCCCTCTGATCATCACAACAACATGGCCAGTTCGATATTGGAGGACGAAGAGTTAGTTTTCAAACACCGCGGGGTAACCTCTGAAGGCTTATTAGGTTTCGACTGTGCTGTTCAGTTCCCTTTATCTCCAATTTCTTCGTCCATTGAATATCAAATGAGTTGTC

Ace file of the UniGene sp_v1.1_unigene84492

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYBPA1 protein n=2 Tax=Vitis vinifera RepID=A4F4L3_VITVI	-	-	8.0e-32	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	myb-like transcription factor 2	-	-	1.49638e-31	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SANT/Myb domain	IPR001005	-	1.49638e-31	82%
Blast2go	Homeodomain-like	IPR009057	-	1.49638e-31	82%
Blast2go	Homeodomain-related	IPR012287	-	1.49638e-31	82%
Blast2go	Myb, DNA-binding	IPR014778	-	1.49638e-31	82%
Blast2go	Myb transcription factor	IPR015495	-	1.49638e-31	82%
Blast2go	Myb-like domain	IPR017877	-	1.49638e-31	82%
Blast2go	Myb domain, DNA-binding	IPR017930	-	1.49638e-31	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 184 - 392

Fln protein: SGKSCRLRWMNYLRPNIKRGNISPEEDDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKNIGALNRRDRSEAKMTEEDMGVSPRLDLVGANQIAVNIENNVTVAQSFDEQSRALLQEDLTMEMPSDHHNNMASSILEDEELVFKHRGVTSEGLLGFDCAVQFPLSPISSSIEYQMSC

Protein Length: 185

Fln nts: GAAGTGGAAAGAGTTGCAGACTACGTTGGATGAATTATCTTCGTCCAAACATAAAACGAGGAAATATTTCTCCCGAAGAGGACGATCTCATAATTAGATTGCATCGTCTTCTGGGCAATCGGTGGTCACTCATAGCAGGAAGACTACCTGGTCGAACAGATAATGAAATAAAGAACTACTGGAATACTCATTTGAGAAAGAATATTGGAGCTCTGAATAGACGAGATCGGAGCGAGGCGAAAATGACTGAAGAAGACATGGGTGTTTCTCCGCGTCTCGATCTCGTCGGAGCAAATCAAATTGCTGTAAATATTGAAAATAATGTAACTGTTGCTCAGTCCTTTGATGAACAGTCGAGGGCACTGTTACAAGAAGATTTAACTATGGAAATGCCCTCTGATCATCACAACAACATGGCCAGTTCGATATTGGAGGACGAAGAGTTAGTTTTCAAACACCGCGGGGTAACCTCTGAAGGCTTATTAGGTTTCGACTGTGCTGTTCAGTTCCCTTTATCTCCAATTTCTTCGTCCATTGAATATCAAATGAGTTGTC

Fln Alignment:

sp_v1.1_unigene84492___GKSCRLRWMNYLRPNIKRGNISPEEDDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKNIGALNRRDRSEAKMTEEDMGVSPRLDLVGANQIAVNIENNVTVAQSFDEQSR
B8LMJ6_______________GKSCRLRWLNYLRPDIKRGNICPDEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKL-SLNESQHKTSQ------------NLISSSKSPLPVQTRVFKASPFPVQTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain