SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84429

Length: 743 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene84429

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing F-box family protein	-	-	1.0e-18	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	kelch repeat-containing f-box family protein	-	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX1

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 70 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 247 - 374

Fln protein: RQREAEKKSSKKFKDSDGESSDIILPGLPNEIALDCLAKVPRLMHQHLIAVSKVWKTVLSSQIINWNSSSGGLPKDYLYVNLMFSAIGDERFYAWNLENKTCLPLPICPINVTCSKFVVSRGKLFSIGGLVNSATSAEVCAYDPSLNRWESLAPLKLPRYEPAVASIGGKIYVMGGCVDSSDWAEVYDPDIGVWTSLSIPxxxxxFATWRKLTQKTIVVKGILFAYIEGKIRGYDFEHNKWLPLQGT

Protein Length: 248

Fln nts: GCGGCAGCGGGAGGCAGAGAAGAAGAGCTCAAAAAAATTCAAGGACAGCGATGGAGAGTCTTCAGACATCATTCTGCCTGGACTACCCAACGAAATTGCGTTGGATTGCTTGGCCAAAGTTCCAAGGCTAATGCATCAACACCTCATAGCAGTCTCCAAGGTATGGAAAACTGTTTTATCCTCCCAAATTATTAACTGGAATTCATCATCAGGAGGGCTTCCGAAAGACTACCTTTATGTAAACCTAATGTTCTCTGCAATTGGGGATGAAAGGTTTTATGCCTGGAACCTAGAGAACAAGACTTGTTTGCCTCTCCCCATATGCCCCATCAATGTGACATGTTCCAAGTTCGTTGTGAGCAGAGGGAAGCTTTTCTCCATTGGGGGATTGGTGAACTCTGCCACTTCAGCCGAGGTGTGTGCCTATGACCCCTCCTTGAATAGGTGGGAGTCCCTTGCACCCCTCAAGCTTCCACGGTACGAGCCGGCAGTTGCTAGTATTGGGGGCAAGATTTATGTCATGGGTGGTTGTGTGGATTCTTCAGACTGGGCAGAGGTTTATGATCCCGACATAGGTGTGTGGACTTCTTTGTCTATTCCTxxxxxxxxxxxxxxxTTTGCAACCTGGAGGAAACTGACCCAAAAGACAATCGTAGTGAAAGGCATTCTTTTCGCTTACATTGAAGGTAAAATCAGGGGGTATGATTTTGAGCATAATAAATGGCTTCCGTTGCAAGGTACTGG

Fln Alignment:

sp_v1.1_unigene84429___IILPGLPNEIALDCLAKVPRLMHQHLIAVSKVWKTVLSSQIINWNSSSGGLPKDYLYVNLMFSAIGDERFYAWNLENKTCLPLPICPINVTCSKFVVSRGKLFSIGGLVNSATSAEVCAYDPSLNRWESLAPLKLPRYEPAVASIGGKIYVMGGC-VDSSDWAEVYDPDIGVWTSLSIPSSKFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEVLFATWRKLTQKTIVVKGILFAYIEGKIRGYDFEHNKWLPLQGT
B8LQX1_______________IILPGLPNEIALDCLAKVPRLMHQHLLAVSKVWKTVLSSQILNWNSSSKGLPKDYMYVNLMFSAIGDERFYAWNLENKTCLPLPMCPVNVTCAKFVVSRGRLFSIGGLVNSATSADVSAYDPSLNRWECLASLKLPRYEPAVASIGGKIYVMGGCGVDSSDWAEVYDPELGLWTSLSIPSLEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQVLFATWKKLTQKAAVVKGILFAYLEGKIRGYDFEHNRWLALQGT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain