SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84368

Length: 361 nt

UniGene Fasta

>sp_v1.1_unigene84368
GGTATCAACGCAGAGTACATGGGGAAAGTCAGTTTTTCTCGCATTCACATTTTTCTTAAGAATTGACATTTATCGCAACTGCAAGCATGTCTCTCGTTCCCGGCTTCTTTGGCAGGCGATCCAGGGTTTTCGATCCCTTGCTTCCAGGTTGCCGATCTTCCAGGTTAGACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCACGGAAAGTTTCTTCGGAGTTTCCGCTTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTATGGAAAATGGAGTGCTCACTGTCACGGTTCCCAAGCAGCCTCAGCC

Ace file of the UniGene sp_v1.1_unigene84368

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat-shock protein, putative	-	-	4.0e-18	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	hsp14_soybn ame: full= kda class i heat shock protein ame: full=hsp -e	-	-	5.36844e-23	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	5.36844e-23	60%
Blast2go	HSP20-like chaperone	IPR008978	-	5.36844e-23	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACL4

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 91 - 158

Fln protein: MSLVPGFFGRRSRVFDPLLPGCRSSRLDRVLKISGERKKEEEKKTDKWHRIERSHGKFLRSFRLPENAKVDQVKATMENGVLTVTVPKQPQ

Protein Length: 92

Fln nts: GGTATCAACGCAGAGTACATGGGGAAAGTCAGTTTTTCTCGCATTCACATTTTTCTTAAGAATTGACATTTATCGCAACTGCAAGC_-_ATGTCTCTCGTTCCCGGCTTCTTTGGCAGGCGATCCAGGGTTTTCGATCCCTTGCTTCCAGGTTGCCGATCTTCCAGGTTAGACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCACGGAAAGTTTCTTCGGAGTTTCCGCTTACCGGAAAATGCGAAGGTGGACCAGGTGAAGGCTACTATGGAAAATGGAGTGCTCACTGTCACGGTTCCCAAGCAGCCTCAGCC

Fln Alignment:

sp_v1.1_unigene84368___MSLVPGFFGRRSRVFDPL-------------------------------------------------LPGCRSSRL------DRVLKISGXXXXXXXXXTDKWHRIERSHGKFLRSFRLPENAKVDQVKATMENGVLTVTVPKQPQ
D5ACL4_______________MSLVPRFFGRRSSVFDPFSLDLWDPSESGNSPFLGDIGHLARNDATAIANTQLDWKETSDAHIFKADLPGLKKEDVKIEVEDDRVLQISGERKKEKEKKNDKWHRIERSHGKFLRRFRLPENAKVDEVKATMENGVLTVTVPKQPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain