SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84163

Length: 454 nt

UniGene Fasta

>sp_v1.1_unigene84163
ATGGGGTCGATCCAGAATACCATCAGTGCTACCAACTGACGGAGAAATCTGATGTCTACAGCTTCGGGGTTGTTTTGTTGGAGATCATCTCTGGTGAATTAGCAGTAGACATGAGTCGAAATGCAAGGGACATCAACCTGGCTAACATGGCCATAACGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGACACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCATTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGTCCAGTATAAGCTCCACCCC

Ace file of the UniGene sp_v1.1_unigene84163

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9SFY5_RICCO	-	-	4.0e-33	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	serine threonine protein kinase family protein	-	-	7.49533e-33	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	7.49533e-33	64%
Blast2go	Protein kinase-like domain	IPR011009	-	7.49533e-33	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAR4

Fln msg: Distance to subject end: 16 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 150 - 166

Fln protein: GVDPEYHQCYQLTEKSDVYSFGVVLLEIISGELAVDMSRNARDINLANMAITKIQEGALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRTHMTEVAGQLREIKQSWDTSTDPGEQQWGSFSKSKQPLSPISVQDNWSSISST

Protein Length: 151

Fln nts: _-_ATGGGGTCGATCCAGAATACCATCAGTGCTACCAACTGACGGAGAAATCTGATGTCTACAGCTTCGGGGTTGTTTTGTTGGAGATCATCTCTGGTGAATTAGCAGTAGACATGAGTCGAAATGCAAGGGACATCAACCTGGCTAACATGGCCATAACGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGACACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCATTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGTCCAGTATAAGCTCCACCCC

Fln Alignment:

sp_v1.1_unigene84163___PEYHQCYQLTEKSDVYSFGVVLLEIISGELAVDMSRNARDINLANMAITKIQE-GALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRTHMTEVAGQLREIKQSWDTSTDPGEQQWGSFSKSKQPLSPISVQDNWSSI
D5AAR4_______________PEYVATGHLTTRSDVYSFGVVLLELLSGRRTVDKNRPPGEQNLVEWAKPSLNDKRKVYHIMDTRM--EGQYSVKGAYCA-SKLALECLNPESKFRPHMKEVVERLEQLQNYKDMAKYPQPNR----SPMNQPVNFSSRNTNHPSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain