SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84120

Length: 332 nt

UniGene Fasta

>sp_v1.1_unigene84120
CCCTGCAGCGGATCAGTAGTTTTCCAGGCTCTTTTCTATTTGACTTTTATGCTGACCGCATGTGCACTGTTTTCAAAGACATGGATTGAAGTATCTGGTTCCTCTGCCAGAGATGTGGCAAAACAACTAAAGGAGCAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCTATTGGTTCCGGTACAGGGATCCTTCTTGCAGTAACTATTATTTACCAGTACTTTGAGACATTTGAGAAGGAAAGGGCCAGTGAACTAGGTTT

Ace file of the UniGene sp_v1.1_unigene84120

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein sec61, putative; K10956 protein transport protein SEC61 subunit alpha	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein transport protein sec61 alpha subunit	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SecY protein	IPR002208	-	0.0	89%
Blast2go	SecY subunit domain	IPR023201	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 110 - 478

Fln protein: PCSGSVVFQALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELG

Protein Length: 111

Fln nts: CCCTGCAGCGGATCAGTAGTTTTCCAGGCTCTTTTCTATTTGACTTTTATGCTGACCGCATGTGCACTGTTTTCAAAGACATGGATTGAAGTATCTGGTTCCTCTGCCAGAGATGTGGCAAAACAACTAAAGGAGCAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCTATTGGTTCCGGTACAGGGATCCTTCTTGCAGTAACTATTATTTACCAGTACTTTGAGACATTTGAGAAGGAAAGGGCCAGTGAACTAGGTTT

Fln Alignment:

sp_v1.1_unigene84120___FQALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQK---------AAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELG
B8LKZ6_______________FHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain