SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84119

Length: 1001 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene84119 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	3.0e-20	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	rna binding	-	-	0.0	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM3

Fln msg: your sequence is shorter than subject: 297 - 375

Fln protein: FVTFADPSVVDKVIQDNHIIDGRTVDIKRTIPRGYTSKIFVGGIPKTITDDEFKDYFSKFGKVIEHQIMRDRSTGESRGFGFITFESEQVVEEIISEQIVEQIISQGKKIELGGKQVEIKIAEPKRSLPGAAPTHGIDSRPPYVPGGVGGFRHSYSGFGGSGYGSNPYMSAGGYGGRPGGYSEYGGSEYGKGYGGYGIVSLEGSKEDPSHGYGVRPASNGEGFGGYGSGMIGGYRATGYGYGSNVDGCSYKLSGYSSNVDGYSSNSSRLGGAYESGTGGPGSRTNDRYHPYARQNN*

Protein Length: 298

Fln nts: TTTGTGACTTTTGCTGACCCCTCTGTGGTGGACAAGGTTATACAGGACAACCACATCATCGATGGCAGAACGGTGGATATCAAAAGAACCATTCCAAGGGGTTATACGTCAAAGATTTTTGTGGGCGGTATACCCAAAACTATTACTGATGATGAGTTCAAGGACTACTTTTCCAAATTTGGGAAAGTTATAGAACATCAGATTATGCGAGATCGGAGCACTGGGGAGTCCAGGGGTTTTGGTTTTATTACTTTCGAAAGTGAGCAAGTTGTGGAGGAAATCATATCTGAGCAGATTGTGGAGCAAATCATATCCCAAGGCAAAAAGATTGAGCTAGGCGGAAAGCAAGTGGAGATCAAGATCGCTGAACCGAAGAGATCCTTGCCTGGCGCTGCTCCTACTCATGGGATTGATAGTCGGCCGCCCTACGTGCCTGGTGGAGTTGGGGGTTTCAGGCATAGTTATAGTGGGTTTGGAGGGTCGGGTTATGGCAGCAACCCGTATATGTCAGCTGGAGGTTATGGCGGTAGGCCTGGAGGGTATTCTGAGTATGGAGGTTCTGAATATGGTAAGGGTTACGGAGGTTATGGGATTGTCAGTTTAGAAGGCTCTAAAGAAGATCCTTCCCATGGCTATGGAGTTCGTCCTGCGTCTAATGGCGAAGGGTTTGGTGGGTATGGTAGTGGGATGATTGGTGGCTATAGAGCTACAGGTTATGGTTACGGTTCCAATGTTGATGGTTGTAGTTATAAGTTATCGGGTTACAGTTCCAATGTTGATGGTTATAGTTCTAACTCATCACGTCTTGGAGGTGCTTATGAGAGTGGGACGGGAGGTCCTGGAAGTAGAACCAATGATCGATATCACCCATATGCCAGGCAGAACAATTGA___TAGTGGAGTTTCTCGAAAGCAATAGTTGTCGATACAGATAAGACTGTTAGAACTCTAACAATTCCAGATATCTACTTTGTTGCCTTCTAGTTTAAAGAAAAGTAAATGTA

Fln Alignment:

sp_v1.1_unigene84119___FVTFADPSVVDKVIQDNHIIDGRTVDIKRTIPRGYTSK------IFVGGIPKTITDDEFKDYFSKFGKVIEHQIMRDRSTGESRGFGFITFXXXXXXXXXXXXXXXXXXXXQGKKIELGGKQVEIKIAEPKRSLPGAAPTHGIDSRPPYVPGGVXXXXXXXXXXXXXXXXSNPYMSAXXXXXXXXXXXXXXXXXXXXXXXXXGIVSLEGSKEDPSHGYGVRPASNXXXXXXXXXXXXXGYRATGYGYGSNVDGCSYKLXXXXXXXXXXXXXXSRLGGAYESGTGGPGSRTNDRYHPYAR
A9NVM3_______________FVTYADASVVDKVIEDKHILDGRTVEIKRTIPRGNTSKGPKTKKIFVGGIPTTITEDEFKDYFSKFGKVAEHQIMQDRSTGRSRGFGFITF---------DSEQVVEEIISQGKMIELGGKQVEIKKAEPKKPSSDAGPVHGIDNRPPYIPGGVGGFRDSYSGFEGAGYGSNPYRSAGGYGGRPGGYAGYGGPEYGRGYGGYGGGSLGGYEEEPSRGYGGRLASYGEGFGGYGSGMIGGYGGGGDGYGAYGDS-----GYGGSFDSSRIGGVYGSGGAYGSGRGAYGGSTNGRYHPYAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain