SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84109

Length: 563 nt

UniGene Fasta

>sp_v1.1_unigene84109
GGGGAAGAGTAGTATTCTTTTACGATTTATTTCTGACATTTTCGATGATCGTCCTCAAACAGTGGGTGTAGACTTCAAAGCGAAGTTCATGACACTAAAAGATAAAGGATTGAAGCTTACAATTTGGGATACAGCTGGCCAAGAGAAATTCAGGACGTTGACGGCTTCATACTATAGATCAGCACATGGCATCATACTTGTTTATGATGTCACCAATCGTGAAACATTTATCAATCTGTCAGATGTATGGTTAAAAGAGGTGGATATTTATTCTACTAATCAGGATTGCATCAAGATGCTCGTCGGAAACAAAGTGGATAGGGAAAGTGAAAGGATTGTTAGCAAAGACGAAGGGATGGAATTTGCGAGGCAATATGGGTGCTTATTTGTTGAATGTAGTGCAAAGGATCGTGTCAATGTTGAGCAGTGCTTTGAGGAGCTTGTCCTTAAGGTGCTTGGAGAAGGAAGCAATAGATAGCTAGAGCGATAAAGCAAGGACATCATCAAACAGGATAAGCAGACTAAGAGATTTTGGAGACACCTAGTTTGTTGGAAGAAAGTTC

Ace file of the UniGene sp_v1.1_unigene84109

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AtRab18 n=2 Tax=Arabidopsis RepID=O23657_ARATH	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	ras-related protein rab-18	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	86%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	86%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	86%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	86%
Blast2go	Small GTP-binding protein domain	IPR005225	-	86%
Blast2go	Ras	IPR013753	-	86%
Blast2go	Small GTPase	IPR020851	-	86%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMY5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, your sequence is shorter than subject: 159 - 208

Fln protein: GKSSILLRFISDIFDDRPQTVGVDFKAKFMTLKDKGLKLTIWDTAGQEKFRTLTASYYRSAHGIILVYDVTNRETFINLSDVWLKEVDIYSTNQDCIKMLVGNKVDRESERIVSKDEGMEFARQYGCLFVECSAKDRVNVEQCFEELVLKVLGEGSNR*

Protein Length: 160

Fln nts: GGGGAAGAGTAGTATTCTTTTACGATTTATTTCTGACATTTTCGATGATCGTCCTCAAACAGTGGGTGTAGACTTCAAAGCGAAGTTCATGACACTAAAAGATAAAGGATTGAAGCTTACAATTTGGGATACAGCTGGCCAAGAGAAATTCAGGACGTTGACGGCTTCATACTATAGATCAGCACATGGCATCATACTTGTTTATGATGTCACCAATCGTGAAACATTTATCAATCTGTCAGATGTATGGTTAAAAGAGGTGGATATTTATTCTACTAATCAGGATTGCATCAAGATGCTCGTCGGAAACAAAGTGGATAGGGAAAGTGAAAGGATTGTTAGCAAAGACGAAGGGATGGAATTTGCGAGGCAATATGGGTGCTTATTTGTTGAATGTAGTGCAAAGGATCGTGTCAATGTTGAGCAGTGCTTTGAGGAGCTTGTCCTTAAGGTGCTTGGAGAAGGAAGCAATAGATAG___CTAGAGCGATAAAGCAAGGACATCATCAAACAGGATAAGCAGACTAAGAGATTTTGGAGACACCTAGTTTGTTGGAAGAAAGTTC

Fln Alignment:

sp_v1.1_unigene84109___GKSSILLRFISDIFDDRPQTVGVDFKAKFMTLKDKGLKLTIWDTAGQEKFRTLTASYYRSAHGIILVYDVTNRETFINLSDVWLKEVDIYSTNQDCIKMLVGNKVDRESERIVSKDEGMEFARQYGCLFVECSAKDRVNVEQCFEELVLKVL
A9NMY5_______________GKSSLLLRFTSDSFDDLSPTIGVDFKLKLMTIAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRETFTNLSEVWAKEVDLYSTNQDCIKMLVGNKVDRETERVVSKKEGIALARQMGCLFLECSAKTHVNVENCFEELVLKIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain