SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84108

Length: 1417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene84108 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-processing protein prp39, putative; K13217 pre-mRNA-processing factor 39	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA-processing protein, HAT helix	IPR003107	-	0.0	73%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB58

Fln msg: Distance to subject end: 176 aas, your sequence is shorter than subject: 238 - 268

Fln protein: MYKKAKEFDVKIHDFETAIRRPYFHVKPLDDLQLGNWHRYLDFIEKVNDFDRTVKLYERCLIACANYPEYWIRYVQCMETAGSMEVANDALARATQIFVKRQPEIHIFAARFKEQMGDIPGARAEYEFLCTELAPGLLDAIIKHANMEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV

Protein Length: 239

Fln nts: ATGGGTGCCGTTTTACTTGTTAACCACTCTTGAGGATATCATGGGTGCAACAATACATACAATGCTGCCAGGGAAGATCAAAGTTCAAATAAGGGCAAAGAGGGCCTCTGAGCACCACTTCATATCTCGGACATAGTATGGTTTTGTCGGGAAGGTAAATTTAGCATATTTGTGCCTAACTTTGGAAGTGTCAATGATGTTACAGTGAAATTTTTCCTTCTGGTCCAAGATTTCCGTCTGTGGTGGGTTTAATCCGATCTTTAATGGGAAGACGACAGAAACAGAGGAGGAATTGTGTGCAGTTGTAACAATTGGATTGTATCTGTGGCATGTTTTTTCAGGTTATTTGAGCGAGGCCTGTCATATGTTGGAACTGACTACTTGTCCTATCCTCTTTGGGATAAGTACATTGAATTTGAATATTCACAGCAGGAGTGGAGTCGCCTGGCACAGATTTACACTCGAATTTTGCAGATTCCTATCCAACAGTTGGACCGATATTACGGAAGTTTCAAGGAACTGTCTGCCAGTAGACCATTATTAGAGTTGCGAACTGTAGAAGAAAATGCAGCTGCTGCTGCAATAGTTACGGGCCAAGACACAGGTGAAAGGCCCACAGATGGTGATGAAGCACCAAATCCTGAAGTTGCTGTTTCATCTGAAGCTGAAGAATTGGAGAAGTACTTGGCTGTTAGAGAAGCA_-_ATGTATAAGAAAGCAAAAGAATTTGATGTAAAGATCCATGATTTTGAGACAGCTATTCGTAGACCTTATTTTCACGTGAAGCCTCTAGATGACTTGCAACTAGGCAACTGGCATCGGTATCTTGACTTCATTGAGAAAGTGAACGATTTTGATCGGACAGTAAAATTGTATGAAAGATGTCTTATTGCATGTGCAAACTACCCAGAGTATTGGATTCGTTATGTTCAATGTATGGAAACCGCTGGAAGCATGGAAGTTGCAAATGATGCTCTTGCACGGGCTACACAAATTTTTGTGAAGAGACAACCTGAGATCCACATTTTTGCTGCAAGATTCAAAGAACAGATGGGAGACATTCCTGGTGCTCGTGCAGAGTATGAATTTCTTTGCACAGAGCTAGCCCCTGGTCTCCTAGATGCTATAATTAAACATGCCAACATGGAACATCGGCTGGGGACCTCTGAATCAGCAATGTCAATATTTGAAACAGCTATTGCAACTGAGAAAGCAAAAGAACAGTCACAGTCACTGCCTCTGTTATATATTCAGTACTCTCGTTTTCTTCAGCTAGCTGCAGGCAATGCAGAAAGAGCAAGAGAAGTTTTGAATGAAGCACTGGAGCTTCTGCCTTTTTCAAAGACTCTTCTTGAGGTAGCTATACATTTAGAATCAAGAAGTCTTGGTTCTAAACAAATTGAGTACCTAGATTCTGTTG

Fln Alignment:

sp_v1.1_unigene84108___MEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV
D5AB58_______________MEHRLGSSESAMPIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAVGNADRAREVLIEALELLPFSKTLLEVAIHLESRRLGSKQIDYLDSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain