SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84081

Length: 575 nt

UniGene Fasta

>sp_v1.1_unigene84081
AAACCCCCACAAGGTATACAATGATGCTAGCTGGGAACGGAGGCTCAGAGTTGAAGGGCCTCTCAACCTCTCGAATTTCAGGATGATCCACAAGCTGGGCAACGGTGACATCGACAATGTTTATTTGGTAGAGCTAAAGGGAGCCGATTGTTATTTTGTGATCAAGGCAATGGATAAGAAGACATTGTCGGGTCAGAATAAGATGATCAGGGCAGAGATGGAGAGGGAGAATTTGGAAACGCTAGATCATACATTCCTACAATTCTGTACGCGCATTTGGACGAGGCACAGTTGTCATGTCTAGCCATGAGTTTTGTCCACACGGGGACCTACATGTTCTCAGGCGACAACCAGCAAAAAGATTCCACGATAATGCTACCAGGTTCTATGCATCGAAACTATAAAGCCGCGAAATTAAGTTTTTGTGCATACCATTTCAATGAGGAAGAGCAATGGAAAATGCTTAGAAAATTCGTTTTTATGGTATTTCAATGTCTTCCGTGACATTATCTTAGCCGTCACGGTTTTTTAGTTATTTAGAGGAGAATATATATTGGGGATCAAAATTCCTTATC

Ace file of the UniGene sp_v1.1_unigene84081

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D6PKL2; D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase; K08286 protein-serine/threonine kinase [EC:2.7.11.-]	-	-	4.0e-24	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	protein kinase 5	-	-	1.98736e-40	67%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	4.0e-24	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	1.98736e-40	67%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	1.98736e-40	67%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	1.98736e-40	67%
Blast2go	protein binding	GO:0005515	Molecular Function	1.98736e-40	67%
Blast2go	basal plasma membrane	GO:0009925	Cellular Component	1.98736e-40	67%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.98736e-40	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.98736e-40	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	1.98736e-40	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV39

Fln msg: Overlapping hits, possible frame ERROR between 259 and 250, and overlapping frame ERROR between 327 and 309, Unexpected STOP codon at 3' end. Distance to subject end: 241 aas, your sequence is shorter than subject: 135 - 492

Fln protein: NPHKVYNDASWERRLRVEGPLNLSNFRMIHKLGNGDIDNVYLVELKGADCYFVIKAMDKKTLSGQNKMIRAEMERENLETLDxxxxxILYAHLDEAQLSCLxxxxxxxxxLHVLRRQPAKRFHDNATRFYASKL*

Protein Length: 136

Fln nts: AAACCCCCACAAGGTATACAATGATGCTAGCTGGGAACGGAGGCTCAGAGTTGAAGGGCCTCTCAACCTCTCGAATTTCAGGATGATCCACAAGCTGGGCAACGGTGACATCGACAATGTTTATTTGGTAGAGCTAAAGGGAGCCGATTGTTATTTTGTGATCAAGGCAATGGATAAGAAGACATTGTCGGGTCAGAATAAGATGATCAGGGCAGAGATGGAGAGGGAGAATTTGGAAACGCTAGATxxxxxxxxxxxxxxxATTCTGTACGCGCATTTGGACGAGGCACAGTTGTCATGTCTAGCxxxxxxxxxxxxxxxxxxxxxxxxCCTACATGTTCTCAGGCGACAACCAGCAAAAAGATTCCACGATAATGCTACCAGGTTCTATGCATCGAAACTATAAAGCCGCGAAATTAAGTTTTTGTGCATACCATTTCAATGAGGAAGAGCAATGGAAAATGCTTAGAAAATTCGTTTTTATGGTATTTCAATGTCTTCCGTGACATTATCTTAGCCGTCACGGTTTTTTAGTTATTTAGAGGAGAATATATATTGGGGATCAAAATTCCTTATC

Fln Alignment:

sp_v1.1_unigene84081___PHKVYNDASWE--RRLRVEGPLNLSNFRMIHKLGNGDIDNVYLVELKGADCYFVIKAMDKKTLSGQNKMIRAEMERENLETLDHTxxPTILYAHLDEAQLSCLAMxxxxxxDLHVLR-RQPAKRFHDNATRFYASKL
A9NV39_______________PHKANNDAGWEAIRSLRAEAPLSLSHFRVIHKLGSGDIGSVYLAELKGTECYFAIKAMDKKALTSRNKLMRAETEREILETLDHPxxPT-LYAHLDEPQLSCLVMxxxxxxDLHVLRQRQPGKRFRDHAARFYASEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain