SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene84057

Length: 542 nt

UniGene Fasta

>sp_v1.1_unigene84057
GGTATCAACGCAGAGTACATGGGGGAATAAAAAACATTAGGGTTTGTATGAATTGTTAACAGGTTGGTAAAGCCGCAATCATGTTGGATAAGATATGGGATGACACTCTTGGCGGCCCGCAGCCAGACAGTGGCCTCAGGAGGCTTCGCAATAATCAGGCAAAATGCAGGTGAGATCAGTAGATGTTGAGGAGTTGAATCTAAAAGAAGGGAGTGGGGGAATTCGTGTGATTGGAAAGCCGCAGAAATTCTCTTTTCAACGCTCGTTATCCATGGAAAATAGCCCTCCATCTTCACCAACTGCAGCCTCTTCCTCATCCGCTTCATCTACTCCACGAGATCGGGAGAATGTATGGAGAAGTGTGTTCCATCCTGGGAGTAATAACCACAGAGCCCTACGGTTTATGACTGGCTCTACAGTGGAGAGACTAGATCCAAATGGCGTTAAAGACCACCTCCTCTTACCAGGATCTCCAGCTTCTTGAATTATGTATATATTTTCAGTCCAGACAGTAATATGTACAGTATGTTTCCTTGTTTAGC

Ace file of the UniGene sp_v1.1_unigene84057

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-repressed 12.5 kDa protein, putative n=3 Tax=Euphorbiaceae RepID=B9RBB2_RICCO	-	-	3.0e-13	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	unknown [Picea sitchensis]	-	-	9.73243e-33	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPP3

Fln msg: Warning!, your query overlaps and the subject is separated, and possible frame ERROR between 382 and 385, your sequence is shorter than subject: 123 - 151

Fln protein: MLDKIWDDTLGGPQPDSGLRRLRNxxxxMQVRSVDVEELNLKEGSGGIRVIGKPQKFSFQRSLSMENSPPSSPTAASSSSASSTPRDRENVWRSVFHPGSxxPQSPTVYDWLYSGETRSKWR*

Protein Length: 124

Fln nts: GGTATCAACGCAGAGTACATGGGGGAATAAAAAACATTAGGGTTTGTATGAATTGTTAACAGGTTGGTAAAGCCGCAATC_-_ATGTTGGATAAGATATGGGATGACACTCTTGGCGGCCCGCAGCCAGACAGTGGCCTCAGGAGGCTTCGCAATxxxxxxxxxxxxATGCAGGTGAGATCAGTAGATGTTGAGGAGTTGAATCTAAAAGAAGGGAGTGGGGGAATTCGTGTGATTGGAAAGCCGCAGAAATTCTCTTTTCAACGCTCGTTATCCATGGAAAATAGCCCTCCATCTTCACCAACTGCAGCCTCTTCCTCATCCGCTTCATCTACTCCACGAGATCGGGAGAATGTATGGAGAAGTGTGTTCCATCCTGGGAGTAxxxAACCACAGAGCCCTACGGTTTATGACTGGCTCTACAGTGGAGAGACTAGATCCAAATGGCGTTAA___AGACCACCTCCTCTTACCAGGATCTCCAGCTTCTTGAATTATGTATATATTTTCAGTCCAGACAGTAATATGTACAGTATGTTTCCTTGTTTAGC

Fln Alignment:

sp_v1.1_unigene84057___MLDKIWDDTLGGPQPDSGLRRLRNNQAxxxxxxxxxSGKMQVRSVDVEELNLKEGSGGIRVIGKPQKFSFQRSLSMEN----XXXXXXXXXXXXXXXXXXRDRENVWRSVFHPGSNxPQSPTVYDWLYSGETRSKWR
A9NPP3_______________MLDKIWDDTLGGPQPDSGLGRLRMNSSxxxxxxxxxAGKLQVGSLDVHEMSSKEGSDGNRVTGKPQKFNFQRSLSMEGSSSASPPASPTVASSSSASSTPRDRENVWRSVFHPGSNxPQSPTVYDWLYSGETRSKWR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain