SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83950

Length: 1091 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene83950

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIC40; TIC40	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	65%
Blast2go	chloroplast organization	GO:0009658	Biological Process	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	65%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock chaperonin-binding	IPR006636	-	0.0	65%
Blast2go	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLS2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 363 - 450

Fln protein: CNSASFKARQNLHCKAQAQDGGVSQRTGRNAKKTGLDQSEVQLDAASKTGTQTAAVGATPFPAQPPPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAASNTSQPGGMPMPPGSGFPFPPFPTPETPLSSTPTVDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEDMLNGMSGDAAWDNRMMESLKNFDLSSQEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPKVQAAIMDCSQNPMSITKYQNDKEVM

Protein Length: 364

Fln nts: TGTAACAGTGCCTCCTTTAAAGCGAGACAGAATTTGCACTGCAAAGCTCAAGCTCAGGATGGTGGCGTGTCTCAGAGAACTGGCAGGAATGCTAAAAAAACAGGGCTGGATCAGTCTGAAGTGCAACTTGATGCAGCTTCAAAGACTGGCACACAGACAGCTGCAGTTGGTGCAACTCCTTTTCCTGCACAACCACCACCAACGTACATAGGGTCACCGCTTCTATGGATAGGAGTTGGAGTTGGAATATCTGCTCTATTCTCTTGGGTGGCTAATAGTGTAAAGAGGTATGCAATGCAGCAGGTTTTCAAGACTATGATGGGCCAGGCAGCTTCAAACACTAGCCAGCCTGGTGGTATGCCTATGCCCCCAGGATCTGGTTTTCCATTTCCTCCATTCCCTACTCCTGAAACTCCCTTGTCATCCACACCGACAGTTGATGTGACTGCAACCAATGTAATGACTGAATTTACTGAGGTCAATGGAGCAGTTGAAACAAAAGTGGAGCCCAAGAAGCCTGCATTTGTGGATGTTAGCCCGGAGGAAGTGTTAGATGAGAAACCTTATGTTGGAGCTCCACAAGATTCTACAGAGAAGAACATTCCTAAGGATTCAGAAGTTAAAACTCAGGCAGACGAGGGTGCGCCTGGTAAATCTTCTGATTTTACTGGAACAGCTGGTCCGATTCTAAGTGTAGAGGCCTTGGAGAAAATGATGGAAGATCCAGTAGTTCAGAAGATGGTCTATCCGTATTTGCCCCAAGAAATGCAGAATCCAACTACATTTAAATGGATGCTGCAAAATCCACAGTATCGTAAACAACTGGAGGATATGCTAAATGGCATGAGTGGAGATGCTGCATGGGACAACCGAATGATGGAATCATTGAAAAATTTTGACCTTAGCAGTCAAGAGGTTAAGCAACAATTTGAGCAAATAGGACTTACTCCAGAAGAGGTGGTGTCCAAAATTATGGCAAATCCTGATGTTGCTATGGCATTTCAGAATCCAAAAGTACAAGCTGCCATTATGGATTGCTCACAGAACCCTATGAGCATTACCAAATACCAAAATGATAAGGAGGTGATGGA

Fln Alignment:

sp_v1.1_unigene83950___CNSASFKARQNLHCKAQAQDGGVSQRTGRNAKKTGLDQSEVQLDAASKTGTQTAAVGATPFPAQPPPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAASNTSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------VDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEDMLNGMSGDAAWDNRMMESLKNFDLSSQEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPKVQAAIMDCSQNPMSITKYQNDKEVM
B8LLS2_______________CDGASFKARRNLHCKAKAQDGGVSQRTGRNPKKTGLNQSEVQLDAASNTGTQTAAVGATPFPAQPSPTYIGSPLLWIGVGVGISALFSWVANSVKRYAMQQVFKTMMGQAAPGTSQPGGMPMPPGSGFPFPPFSTPETSQPGGMPMPRGSGFPFPPFPTLETPSSSTPTVDVPATKVTTEFTEVNGALETKVEPKKPAFVDVSPEEVLDQKSYVEAPQDSTEKNVPKDSEVETQADGGATGKSSNFTGTADPILSVDALEKMMEDPVVQKMVYPYLPQEMQNPTTFKWMLQNPQYRKQLEEMLNNMSGDDAWDNRMMESFKNFDLSSNEVKQQFEQIGLTPEEVVSKIMANPDVAMAFQNPRVQAAIMDCSQNPMSITKYQNDKEVM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain