SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83915

Length: 440 nt

UniGene Fasta

>sp_v1.1_unigene83915
TATTTCAAAAAATCATTTGCACGCTTTAACGTCAAGCGGGTTGCGGCAAGTTGTGTTTGGCTTGCGGCGAAGCTTGAAGAAAGCCCTCGGAGGATTCCGCAGGTTTTGAATGTGTTTCATCGAATGGAATGCAGGCGAGAGAATTTGCCTCTTGAACCTTTAGAACCTCATTCCAAAGAAGCTTGGAATTTGGCAAATGACAGCTTGCGGACGACATTATGTGTTCGATTCAAGAGTGAGGTTGTGGCCTGTGGAGTTGTCTATGCAGCAGCTCGTCGATTTCAGGTTCCCCTCCCCGAGAATCCACCATGGTGGAAAGTCTTTGATGCTGAGAAGCATGAGATTGATGAAGTATGCAAGGTTCTTGCCAACTTATATAGGCAGCCTAAGGCACGCTATATTGAAGTATGCAAAGATCAGAATCAAATATATTGACAAAC

Ace file of the UniGene sp_v1.1_unigene83915

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RCY1; RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	ania-6a type cyclin	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	66%
Blast2go	defense response to virus	GO:0051607	Biological Process	66%
Blast2go	response to light stimulus	GO:0009416	Biological Process	66%
Blast2go	response to salt stress	GO:0009651	Biological Process	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, N-terminal	IPR006671	-	66%
Blast2go	Cyclin-like	IPR013763	-	66%
Blast2go	Cyclin C/H/T/L	IPR015429	-	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABM5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 137 aas, your sequence is shorter than subject: 145 - 350

Fln protein: YFKKSFARFNVKRVAASCVWLAAKLEESPRRIPQVLNVFHRMECRRENLPLEPLEPHSKEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWKVFDAEKHEIDEVCKVLANLYRQPKARYIEVCKDQNQIY*

Protein Length: 146

Fln nts: TATTTCAAAAAATCATTTGCACGCTTTAACGTCAAGCGGGTTGCGGCAAGTTGTGTTTGGCTTGCGGCGAAGCTTGAAGAAAGCCCTCGGAGGATTCCGCAGGTTTTGAATGTGTTTCATCGAATGGAATGCAGGCGAGAGAATTTGCCTCTTGAACCTTTAGAACCTCATTCCAAAGAAGCTTGGAATTTGGCAAATGACAGCTTGCGGACGACATTATGTGTTCGATTCAAGAGTGAGGTTGTGGCCTGTGGAGTTGTCTATGCAGCAGCTCGTCGATTTCAGGTTCCCCTCCCCGAGAATCCACCATGGTGGAAAGTCTTTGATGCTGAGAAGCATGAGATTGATGAAGTATGCAAGGTTCTTGCCAACTTATATAGGCAGCCTAAGGCACGCTATATTGAAGTATGCAAAGATCAGAATCAAATATATTGACAAAC

Fln Alignment:

sp_v1.1_unigene83915___YFKKSFARFNVKRVAASCVWLAAKLEESPRRIPQVLNVFHRMECRRENLPLEPLEPHSKEAWNLANDSLRT
D5ABM5_______________YFKKSFARFNVKRVAASCVWLAAKLEESPRKIPQVLNVFHRMECRRENLPLEPLEPHSKKYAEMKMDLNRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain