SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83896

Length: 437 nt

UniGene Fasta

>sp_v1.1_unigene83896
GCTGCGGAGGACAAAGATAGCACTGATAAAGAGGGCAGGCCCATCATTGTGCTTCCTCCAGCTGATGTGCAAGTAGTTCATTGTGAGCTCACAGAAGCTGAGAAAGATTTTACGGAGCTTTGTATAAAAAGTCTAAAGTCAAGTTTGATCAATTTGTGGAACAAGGCAGGGTTCTCCACAATTATGCTTCCATTCTGGAATTACTTCTGAGGCTACGCCAATGTTGTGATCATCCTTTTCTTGTTATGAGCCGTGGTGATACACAAGAATATTCTGATTTGAATAAGCTGGCAAAACGATTTCTTAAACAAGGTCAGCCAGCTACAAATGGGGAATCTGATTCTGCACCTTCAAAAGCTTATATTCAAGAGGTGGTTGAAGAACTCCGTAGAGGGGAAAAGGCAGAGTGCCCGATTTGTCTTGAAGCAGTTGAAGAT

Ace file of the UniGene sp_v1.1_unigene83896

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair helicase rad5,16, putative (EC:2.7.11.1)	-	-	80%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	dna repair helicase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	0.0	86%
Blast2go	binding	GO:0005488	Molecular Function	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNI6

Fln msg: Overlapping hits, possible frame ERROR between 138 and 108, Distance to subject end: 226 aas, your sequence is shorter than subject: 146 - 1029

Fln protein: AAEDKDSTDKEGRPIIVLPPADVQVVHCELTEAEKxxxxxxxxxxxxKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKQGQPATNGESDSAPSKAYIQEVVEELRRGEKAECPICLEAVED

Protein Length: 147

Fln nts: GCTGCGGAGGACAAAGATAGCACTGATAAAGAGGGCAGGCCCATCATTGTGCTTCCTCCAGCTGATGTGCAAGTAGTTCATTGTGAGCTCACAGAAGCTGAGAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGTTTGATCAATTTGTGGAACAAGGCAGGGTTCTCCACAATTATGCTTCCATTCTGGAATTACTTCTGAGGCTACGCCAATGTTGTGATCATCCTTTTCTTGTTATGAGCCGTGGTGATACACAAGAATATTCTGATTTGAATAAGCTGGCAAAACGATTTCTTAAACAAGGTCAGCCAGCTACAAATGGGGAATCTGATTCTGCACCTTCAAAAGCTTATATTCAAGAGGTGGTTGAAGAACTCCGTAGAGGGGAAAAGGCAGAGTGCCCGATTTGTCTTGAAGCAGTTGAAGAT

Fln Alignment:

sp_v1.1_unigene83896___KDSTDKEGRPIIVLPPADVQVVHCELTEAEKDxxxxxxxxxxVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKQGQPATNGESDSAPSKAYIQEVVEELRRGEKAECPICLEAVED
Q9FNI6_______________KSSTDREGRPILVLPPADARVIYCELSESERDxxxxxxxxxxVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain