SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83843

Length: 1243 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene83843 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	xyloglucan endotraglucosylase hydrolase	-	-	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	61%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	76%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	76%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKN9

Fln msg: Overlapping hits, possible frame ERROR between 577 and 552, W2: There is no M at the beginning,

Fln protein: WYQRRVHGAREKLISISLQLNICKSHKSIMAFIRELPLLVLAFMLVLSVAHIQVSEAAGRPQSSHGTAYPLRSQLSAVKFNQAFDVLWGPQHEQVSNDESGITIWLDRTSGSGFKSQRAYDSGYFSAAIKLQAGYTAGVNTAFYLSNNEVHPDSHDEIDIEFLGTIPGQPYTLQTNIYVRAANxxxxxxxxxxREQQIHLWFDPTSDFHRYSILWTPSKIVFSVDNVQIRKYPRTGSAFPTRPMWLYGSIWDASSWATDNGKYKVDYNYQPFVARYTDFVLTDCTQSRAAECS*

Protein Length: 295

Fln nts: GTGGTATCAACGCAGAGTACATGGGGCAAGGGAGAAACTCATTTCCATTAGCTTGCAGCTGAACATCTGCAAGAGCCATAAGTCCATCATGGCATTCATTAGGGAGCTTCCATTACTGGTCCTTGCATTTATGCTAGTCCTTTCAGTTGCTCATATTCAAGTATCAGAAGCAGCAGGGAGGCCTCAGTCCTCTCATGGCACTGCTTATCCTCTTAGATCTCAGCTCTCTGCTGTGAAGTTTAATCAAGCCTTTGACGTTCTATGGGGACCTCAGCACGAACAAGTCTCCAATGACGAGTCTGGGATTACCATTTGGCTCGACAGGACCTCTGGAAGTGGATTCAAATCACAGCGGGCATACGACTCAGGCTATTTCAGTGCAGCTATTAAGCTGCAGGCTGGGTATACTGCAGGAGTTAACACTGCATTCTATTTATCGAATAACGAGGTTCATCCGGACTCCCACGACGAGATAGACATTGAGTTTTTGGGAACAATACCAGGGCAACCATATACCTTACAGACCAATATATATGTACGAGCAGCAAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGGAGCAGCAAATCCACCTTTGGTTTGACCCCACGAGCGATTTCCACCGTTACAGTATTCTTTGGACCCCATCTAAGATTGTATTCTCAGTGGACAATGTCCAGATAAGAAAGTATCCAAGGACGGGCTCGGCTTTCCCAACAAGGCCCATGTGGCTGTACGGATCAATCTGGGATGCATCTTCTTGGGCTACAGACAATGGCAAATACAAGGTCGACTACAACTACCAACCATTCGTAGCAAGATACACAGACTTCGTCCTCACCGACTGCACACAATCAAGGGCAGCAGAATGCTCATGAAAAGAACAATAATAATAAATTACAATAAACATCCAATACAAGTATGTCAGTGGATTCATGCGGTATTCGGCGCTACAAATGTATATAATTATATCCTGTAACCAAAGTCAGAATCGGCATCCATGGTTGGCTGTGTCCAGTAGAAGTATAATCTATTATTAAAAGGGTTGGTCCCACTGTATGTTTATCCATAAAAGAGTTTGTATAGCTGTTACGTGTACGAACTGTAATGTTCCAGACCAGTATTGTCAACTGTTATACCGGAAGCGGTAAGAGCTCTCCCGTGTATTGTGATTTGATATTAGTAAATATAAAGGGATGGATGTTAACTGTTTTGAATTTGATGTGTGTCGGAATTCGTG

Fln Alignment:

sp_v1.1_unigene83843___ISLQLNICKSHKSIMAFIREXXXXXXXXXXXXXVAHIQVSEAAGRP-QSSHGTAYPLRSQLSAVKFNQAFDVLWGPQHEQVSNDESGITIWLDRTSGSGFKSQRAYDSGYFSAAIKLQAGYTAGVNTAFYLSNNEVHPDSHDEIDIEFLGTIPGQPYTLQTNIYVRAANxxxxxxxxxREQQIHLWFDPTSDFHRYSILWTPSKIVFSVDNVQIRKYPRTGSAFPTRPMWLYGSIWDASSWATDNGKYKVDYNYQPFVARYTDFVLTDCTQSRAAECS
A9NKN9_______________MNLQLNICKSHKSLMALNRELALLVLAFVLLFSVSDIQVSEAAGRPYSSSHGATYPITSQLSAVKFNQAFGVLWGPQHEQVSDDESGITIWLDRNSGSGFKSLRAYNSGYFSAAIKLQAGYTAGTNTAFYLSNNEVHPDYHDEIDIEFLGTIPGRPYTLQTNIYVLAGNxxxxxxxxxREQQIHLWFDPTSDFHRYSILWTPSKIVFSVDDVPIRRYPRT-DAFPTRPMWVYGSIWDASSWATDSGRYKVDYNYQPFVAKYTDFVLTDCTQSMAAECS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain