SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83832

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene83832
ATGGGGAATGGAAATGGAAGGAGCTAATCAACACGATGGCGGGTCGCAGATGCCCACGCAAACTGACGATGATCGAAACAAAGCTCCACGCATTCACATGATCCGCGCGGTTCAGCATTTGATCGAGAGATGTCTGCTTTTTCAAATGGATCTCCACGACTGCGTCGAAACCCTAGAAAAGCATGCCAAAATCCACCCCGCCCTCACCATCGCAGTTTGGAGGGGTTTGTTGAAAGAAAACAGGGAGTTCTTCGATGCCTATCTTATAAACAGCGCGAGATCACATAATCGTCCTCCTGCTCCACCAGACAGCCCACAATGATCATGTGTTGTGTATAGGAGAAGCCCGACATCAGACTTTGGAGGACTTACGTATGCATATGGATATATTCTCTAAACATTTTCGAGAACTGCATTATATTCATTACTAGTATAGGTTTGGTTCTTATGTTTTGCTTGTTATGAGTAGAATTTCTATGCATAGAGGATGTAAAGAAAGTTGTTCACTTTGTCCTAATTTATTCTGAATGTTCGCA

Ace file of the UniGene sp_v1.1_unigene83832 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	A_thal_3526 domain containing protein	-	-	5.0e-17	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	uncharacterized protein	-	-	1.54623e-24	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	developmental process	GO:0032502	Biological Process	1.54623e-24	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Conserved hypothetical protein CHP01589, plant	IPR006476	-	1.54623e-24	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXT8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 105 - 131

Fln protein: MEMEGANQHDGGSQMPTQTDDDRNKAPRIHMIRAVQHLIERCLLFQMDLHDCVETLEKHAKIHPALTIAVWRGLLKENREFFDAYLINSARSHNRPPAPPDSPQ*

Protein Length: 106

Fln nts: ATGGGGA_-_ATGGAAATGGAAGGAGCTAATCAACACGATGGCGGGTCGCAGATGCCCACGCAAACTGACGATGATCGAAACAAAGCTCCACGCATTCACATGATCCGCGCGGTTCAGCATTTGATCGAGAGATGTCTGCTTTTTCAAATGGATCTCCACGACTGCGTCGAAACCCTAGAAAAGCATGCCAAAATCCACCCCGCCCTCACCATCGCAGTTTGGAGGGGTTTGTTGAAAGAAAACAGGGAGTTCTTCGATGCCTATCTTATAAACAGCGCGAGATCACATAATCGTCCTCCTGCTCCACCAGACAGCCCACAATGA___TCATGTGTTGTGTATAGGAGAAGCCCGACATCAGACTTTGGAGGACTTACGTATGCATATGGATATATTCTCTAAACATTTTCGAGAACTGCATTATATTCATTACTAGTATAGGTTTGGTTCTTATGTTTTGCTTGTTATGAGTAGAATTTCTATGCATAGAGGATGTAAAGAAAGTTGTTCACTTTGTCCTAATTTATTCTGAATGTTCGCA

Fln Alignment:

sp_v1.1_unigene83832___MEMEGANQHDGGSQMPTQTDDDRNKAPRIHMIRAVQHLIERCLLFQMDLHDCVETLEKHAKIHPALTIAVWRGLLKENREFFDAYLINSARSHNRP-------PAPPDSPQ*SCVVYRRSPTSDF
A9NXT8_______________MRIQRTNRIDRGLIL-MQTHDDRNEDQRVHMIRTVQHLIERCLLFHMDLPGCVETLAKRANIDPVLTIAVWKGLLKENGDFFRAYFVRNARLYNPPYTAGKYFSTHISGMSTSHVIY-RGPSSDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain