SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83776

Length: 241 nt

UniGene Fasta

>sp_v1.1_unigene83776
TATCACTGCCACAATGCACATGAACAGAACGGACAAGCAAGATCGTTTGTACACTGCCTTTAAGTATTTTGATAAGGACAACAGCGGGTACATTACAAAGGAGGAAATAGAACAGGTACTGAAAAACTATGGAATGGGTGATCAGAAGACCATTAAGGAGATAATTGACGAGGTGGACATAGATAATGATGGACGAATTGACTACGAGGAGTTTGTGGCAATGATGAACAAGGGCAACCCA

Ace file of the UniGene sp_v1.1_unigene83776

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium dependent protein kinase 22 n=2 Tax=Populus trichocarpa RepID=B9GX38_POPTR	-	-	3.0e-28	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	calcium-dependent protein kinase	-	-	3.25728e-28	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of anion channel activity	GO:0010359	Biological Process	3.25728e-28	84%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	3.25728e-28	84%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	3.25728e-28	84%
Blast2go	protein binding	GO:0005515	Molecular Function	3.25728e-28	84%
Blast2go	kinase activity	GO:0016301	Molecular Function	3.25728e-28	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.25728e-28	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	3.25728e-28	84%
Blast2go	EF-hand-like domain	IPR011992	-	3.25728e-28	84%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	3.25728e-28	84%
Blast2go	EF-hand	IPR018248	-	3.25728e-28	84%
Blast2go	EF-HAND 2	IPR018249	-	3.25728e-28	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ15

Fln msg: Distance to subject end: 16 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 76 - 151

Fln protein: MHMNRTDKQDRLYTAFKYFDKDNSGYITKEEIEQVLKNYGMGDQKTIKEIIDEVDIDNDGRIDYEEFVAMMNKGNP

Protein Length: 77

Fln nts: TATCACTGCCACA_-_ATGCACATGAACAGAACGGACAAGCAAGATCGTTTGTACACTGCCTTTAAGTATTTTGATAAGGACAACAGCGGGTACATTACAAAGGAGGAAATAGAACAGGTACTGAAAAACTATGGAATGGGTGATCAGAAGACCATTAAGGAGATAATTGACGAGGTGGACATAGATAATGATGGACGAATTGACTACGAGGAGTTTGTGGCAATGATGAACAAGGGCAACCCA

Fln Alignment:

sp_v1.1_unigene83776___ITATMHMNRTDKQDRLYTAFKYFDKDNSGYITKEEIEQVLKNYGMGDQKTIKEIIDEVDIDNDGRIDYEEFVAMMNKGN
A9NZ15_______________IAATFHLNKLEREEHLFAAFSYFDKDASGYITVDELQQACLEHNLTDVR-IDEIIREVDQNNDGRIDYNEFVAMMRKGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain