SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83723

Length: 269 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene83723
GCATTTAATTTTCTTTCAATTGCAGAAATGGCCGAAGTTGAGGGGTGCAAATCCGAGCAGAGACAGAAGCAGAGGAGAGCAGTGGTCGCAGTGGACGAGAGCGAAGAAAGTATGCATGCCTTGTCTTGGGCTCTGCAGTATCTGTTACTCCAGGATTCCAAGGAAGATCATGTTATTCTCTTGCACGCTCAGTCGCCCCCTAGAGTTTATGGGGCAACCGATGGCACAGCTTACGTCTTCTCGTCTGATATCATGGAGTCTCTAGAGAA

Ace file of the UniGene sp_v1.1_unigene83723 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	USP-like protein n=1 Tax=Astragalus sinicus RepID=Q07A28_ASTSI	-	-	2.0e-11	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	usp-like protein	-	-	1.33673e-13	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UspA	IPR006016	-	1.33673e-13	74%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	1.33673e-13	74%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVD5

Fln msg: Distance to subject end: 89 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 80 - 168

Fln protein: MAEVEGCKSEQRQKQRRAVVAVDESEESMHALSWALQYLLLQDSKEDHVILLHAQSPPRVYGATDGTAYVFSSDIMESLE

Protein Length: 81

Fln nts: GCATTTAATTTTCTTTCAATTGCAGAA_-_ATGGCCGAAGTTGAGGGGTGCAAATCCGAGCAGAGACAGAAGCAGAGGAGAGCAGTGGTCGCAGTGGACGAGAGCGAAGAAAGTATGCATGCCTTGTCTTGGGCTCTGCAGTATCTGTTACTCCAGGATTCCAAGGAAGATCATGTTATTCTCTTGCACGCTCAGTCGCCCCCTAGAGTTTATGGGGCAACCGATGGCACAGCTTACGTCTTCTCGTCTGATATCATGGAGTCTCTAGAGAA

Fln Alignment:

sp_v1.1_unigene83723___RRAVVAVDESEESMHALSWALQYL-------------LLQDSKEDHVILLHAQSPPRVYGATDGTAYVFSSDIMESLE
A9NVD5_______________KNIVVAVDESEESMHACEWACKHLSAIETPKVIETTDIQQQQQSYNMILIHVQSTASSFSA--GPAYILSNQVFEFLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain