SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83722

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene83722
ACAGAGATTCAAGCGAGGATGACGAACAAGGAAATCTACGAGCGGTCCGGGCGGGCATTTGTGCTTTCGGCTCAGAGCTCCCATTTTCGACAGAGAGCCACAACACGAGGCGAAAGTTTTGAGAGTTACAGCAGGGAATACCAGACTCCATCCATGGCGAACATGGTTCTCCGTTCCCAAACCTTCTCGGCAACGGCATCATCGAACCCTACTTCGAATTCTACAGTGAGTTCGAGTTCGAGTTCGATCCGTGCTCGGTGACCGTCTGAGTAACTCGCCGAATTCGATCCGCTGAGAAAATCATGTTTTAAGGATAGCAATTTGAATGCTGGATTTTGAGGTACACAATTTAAATCAGTCTTTTGTTGCCTTTTGAACATCTGTAAATCTAGATAATCGCAAGGATAAGAAGTTCTAAGCGTGTA

Ace file of the UniGene sp_v1.1_unigene83722 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	9.0e-12	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein binding	-	-	1.69247e-24	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: your sequence is shorter than subject: 113 - 829

Fln protein: TEIQARMTNKEIYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMANMVLRSQTFSATASSNPTSNSTVSSSSSSIRAR*PSE*LAEFDPLRKSCFKDSNLNAGF*

Protein Length: 114

Fln nts: ACAGAGATTCAAGCGAGGATGACGAACAAGGAAATCTACGAGCGGTCCGGGCGGGCATTTGTGCTTTCGGCTCAGAGCTCCCATTTTCGACAGAGAGCCACAACACGAGGCGAAAGTTTTGAGAGTTACAGCAGGGAATACCAGACTCCATCCATGGCGAACATGGTTCTCCGTTCCCAAACCTTCTCGGCAACGGCATCATCGAACCCTACTTCGAATTCTACAGTGAGTTCGAGTTCGAGTTCGATCCGTGCTCGGTGACCGTCTGAGTAACTCGCCGAATTCGATCCGCTGAGAAAATCATGTTTTAAGGATAGCAATTTGAATGCTGGATTTTGA___GGTACACAATTTAAATCAGTCTTTTGTTGCCTTTTGAACATCTGTAAATCTAGATAATCGCAAGGATAAGAAGTTCTAAGCGTGTA

Fln Alignment:

sp_v1.1_unigene83722___TEIQARMTNKEIYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMANMVLRSQTFXXXXXXXXXXXXXXXXXXXXXXXXXXSE*LAEFDPLRKSCFKDSNL----NAGF
C0PS55_______________TEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTL----SATASSNPASISTATSISARRTSEKLAKIAMLRKSCARVSDLHGFENGGF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain