SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83709

Length: 412 nt

UniGene Fasta

>sp_v1.1_unigene83709
GGATGGTCTACTGGGTTTTGATCTACAGACTGACGGGCATGGTCAAAAGCATTTGAGTCTCCCAACCATTGGAGAAGGTGCAGTGAAGGACTTGGGTAGCTCAAATGGTGCAGCACTGAAACCTCCAAAGCCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACGGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGACTGAAGATTCAACCAGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAGGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAAC

Ace file of the UniGene sp_v1.1_unigene83709

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-ketoacyl-acyl carrier protein synthase III n=2 Tax=Elaeis RepID=Q1KS41_ELAOL	-	-	4.0e-36	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	beta-ketoacyl-acp synthase iii	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thiolase-like, subgroup	IPR016038	-	0.0	73%
Blast2go	Thiolase-like	IPR016039	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKT2

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 137 - 408

Fln protein: DGLLGFDLQTDGHGQKHLSLPTIGEGAVKDLGSSNGAALKPPKPSSHSCIQMNGKEVFRFAVNRVPRVIEAAMEEAGIAGSHLDWLLLHQANxxLKIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQSGHVIA

Protein Length: 138

Fln nts: GGATGGTCTACTGGGTTTTGATCTACAGACTGACGGGCATGGTCAAAAGCATTTGAGTCTCCCAACCATTGGAGAAGGTGCAGTGAAGGACTTGGGTAGCTCAAATGGTGCAGCACTGAAACCTCCAAAGCCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACGGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACxxxxxxCTGAAGATTCAACCAGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAGGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAAC

Fln Alignment:

sp_v1.1_unigene83709___DGLLGFDLQTDGHGQKHLSLPTIGEGAVKDLGSSNGAALKPPKPSSHSCIQMNGKEVFRFAVNRVPRVXXXXXXXXXXXXSHLDWLLLHQANQxxxxxxxxRLKIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ
B8LKT2_______________DGLLGFDLQSDGHGQKHLSVPAMGERAVKDLGSSNGAALKPPKPPSPSCIQMNGKEVFRFAVSRVPQVIEAAMEEAGMTGSHLDWLLLHQANQxxxxxxxxRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain