SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83688

Length: 1315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene83688 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alba multi-domain protein	-	-	2.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA-binding protein Alba-like	IPR002775	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX9

Fln msg:

Fln protein: MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAGSLLQERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTVISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDMKSPGYQAPLPIDQVKQPNAGVDGDMQGGIARERGRGRGRGRGRGWGRGWAVSYNGGYYNWGWGRGRGRGRRGRGRQVNMLEDGNAYNGQDSTNFAPRARGGVRGRGRGGRGRGMAANESVA*

Protein Length: 242

Fln nts: ATGGGACCCGGCCACCTGCTGAAAGATCAATAGAAACGAAACGGCTCATCACATTCTCCATTGCATGCATGCTACATATCTACCATCATCATCATATATAGAACACACACTCGTAAACATCAAGAAGAGACACAGATGCACCTTCTTGACTACTCCCTCTTGCACTTCCCACCTTTAAACTTGGCCTCTTCATCTGCTCATCCGGCTGATTATATTACTCGGGGTTTGCTTTTCTTAGGGCATTTGAGGTCATCGAAGAGCCAGC_-_ATGGACAGATATCAAAGAGTCGAGAAGCCGAGACCTGAGTCGGCCATCCATGAGAATGAGATTCGTATCACCACCCAGGGGCTCATAAGGAATTACATCAGCTATGCCGGCAGTCTTTTACAGGAAAGAAAGGCACCAGAAATTTCCTTGAAGGCAATGGGTCAGGCAATAAGTAAAACCGTTGCTGTAGCTGAGATCTTAAAACGGCGGGTTCCTGGTTTGCATCAAACCACAGTTATTAGCTCAACAAGCATAGTTGATGTTTGGGAGCCTATTGAAGAAGGACTACTACCTCTGGAAACAACTCGACATGTTTCTATGATATCAATCACTTTGGCCACTAAGGAACTCGATATGAAGTCACCAGGTTACCAGGCTCCATTACCAATTGATCAGGTCAAACAACCAAATGCTGGTGTTGATGGAGATATGCAAGGTGGTATAGCTAGAGAACGTGGCAGAGGTAGAGGCAGAGGCAGAGGCAGGGGTTGGGGCCGAGGTTGGGCTGTTTCATATAATGGTGGCTATTATAATTGGGGGTGGGGTCGTGGCCGTGGTAGAGGTCGACGAGGACGTGGAAGGCAGGTGAATATGCTTGAAGACGGTAATGCTTATAATGGACAAGATTCAACTAATTTTGCTCCTCGAGCCCGTGGAGGTGTCAGAGGCAGAGGTCGAGGTGGTCGAGGAAGGGGAATGGCTGCAAATGAAAGTGTAGCTTGA___TTTCTAATCTGTTACATGCAATGAAGCTGTCTTGGTTTCTCTTGCAATATTTTAGACAAACTTCTTTGGAGCAATAACTGCTGGTTATTGTATGGTACGGGAATTATTCAGTTAGCATGTTCTTCATGTGAAATTTTGGTTGTTTATGTCGATATTATGTGAAACAAGAGCGCTTTAGCTGTGCATTTTTCCCCAGTGTTTCTGCCAGCAATAGCTGATTGTCGCTTGAGGCATGTTTACCTACCATTCTCATGTTCACATGGCATATTTGGGAATACTACACTCTTGTGGTTTTTAATCTCTGTAGCAATAGAGAGATTGAGGATT

Fln Alignment:

sp_v1.1_unigene83688___MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAGSLLQ-ERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTVISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDMKSPGYQAPLPIDQVKQPNAGVDGDMQXXXXXXXXXXXXXXXXXXXXXGWAVSY--XXXXXXXXXXXXXXXXXXXXXRQVNMLEDGNAYNGQDSTNFAPXXXXXXXXXXXXXXXXGMAANESVA
D5ACX9_______________MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAASLLQQERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTAISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDIKSPGYQAPLPIDQVKQANAGFDGDVQGGIARGRGRGRGRGRGRGWGRGWAIPYNGGGYYNWGWGRGRGRGGRRGRGRQMNMLEDGNGYNGPNSTNFAPRPRGGGRGRGRGGRGRGLTTNEVVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain