SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83624

Length: 534 nt

UniGene Fasta

>sp_v1.1_unigene83624
ATGGGCATATGTTGAGTTCACACAAATTGAGGTGGTCTATAAGGTCAGGGTGAAGGATTCATCAACACTCGCTGTGTTTATGGGGAGTGGATTTGAAAGTAGATTGCATTGAATACTGACATTAACACATCCATCTAAACCTGAGCACGAATTGAGCTGCTCTACTGGGCGAGGTTAAAGGATTTATCGAACATTTATTGAGAGAAAATTCCAAACCAATGGTGAAAGCTCCAGAGATAAATCTGGGAGGCAGCAGGGAGTGGCGTTGGTCATAGGGATAACAGGAATTGTAGGAAATTGCTTGGCAGAAATATTGCCATTATCTGACACTCCTGGTGGACCTTGGAAAGTTTATGGAATTGCTAGGAGGCCTAAGCCAGATTGGTCTCCAGATAGTCCAGTGGAATACATTCAATGTGATGTTTTAGATAGAGAGCAAACTTTAGAAAAAATCTCACCACTGAAGGATGTCACCCATCTCTTTTGGGTTGTTTGGGTTAACAGAGAAACAGAGGAGGAGAACTGTGAGGACAA

Ace file of the UniGene sp_v1.1_unigene83624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gene induced upon wounding stress n=1 Tax=Arabidopsis thaliana RepID=Q39171_ARATH	-	-	2.0e-35	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	progesterone 5-beta-reductase	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	84%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	0.0	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS7

Fln msg: Distance to subject end: 273 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 118 - 399

Fln protein: RIYRTFIERKFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISPLKDVTHLFWVVWVNRETEEENCED

Protein Length: 119

Fln nts: ATGGGCATATGTTGAGTTCACACAAATTGAGGTGGTCTATAAGGTCAGGGTGAAGGATTCATCAACACTCGCTGTGTTTATGGGGAGTGGATTTGAAAGTAGATTGCATTGAATACTGACATTAACACATCCATCTAAACCTGAGCACGAATTGAGCTGCTCTACTGGGCGAGGTTAAAGGATTTATCGAACATTTATTGAGAGAAAATTCCAAACCAATGGTGAAAGCTCCAGAGATAAATCTGGGAGGCAGCAGGGAGTGGCGTTGGTCATAGGGATAACAGGAATTGTAGGAAATTGCTTGGCAGAAATATTGCCATTATCTGACACTCCTGGTGGACCTTGGAAAGTTTATGGAATTGCTAGGAGGCCTAAGCCAGATTGGTCTCCAGATAGTCCAGTGGAATACATTCAATGTGATGTTTTAGATAGAGAGCAAACTTTAGAAAAAATCTCACCACTGAAGGATGTCACCCATCTCTTTTGGGTTGTTTGGGTTAACAGAGAAACAGAGGAGGAGAACTGTGAGGACAA

Fln Alignment:

sp_v1.1_unigene83624___KFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISPLKDVTHLFWVVWVNRETEEENCED
A9NUS7_______________KFQTNGESSGEKPEKQQGVALVIGVTGIVGNCLAEILPLSDTPGGPWKVYGVARRPKPDWSPDSPVEYVQCDVLDREHTLEKISPLKDVTHLFWVVWVNRETEEQNCED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain