SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83623

Length: 809 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene83623 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG3386 Gluconolactonase	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	adipocyte plasma membrane-associated	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	75%
Blast2go	Strictosidine synthase, conserved region	IPR018119	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN24

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 269 - 363

Fln protein: LNGSWEDWKMVGSTPLGLTVSKSGDVLICMPNQGLLKVNDDQIFLLASEVDGIPIRLANAVVEASDGNVYFSDASTKFGADRFFLDLLEAKPHGRLLKYDPITKKTTVLLDGLGFANGVALSSEEDYILICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGQSYWIALIGRIRSRPLEFVYRYGILKHIFATYPYLLEWIGFQKNQAMVVKVGEEGEPIISFDDSNGKVMSLVTSAMEVGDYLYLGSLKANFLGRLSAD

Protein Length: 270

Fln nts: TTTAAATGGGTCATGGGAAGATTGGAAGATGGTTGGAAGCACTCCTCTCGGCCTTACCGTGAGCAAGAGTGGTGATGTTCTTATTTGTATGCCCAACCAGGGCCTGCTGAAGGTTAATGATGATCAAATATTTCTTTTAGCTTCAGAAGTTGACGGAATTCCGATCAGGTTAGCTAATGCTGTTGTCGAGGCTAGCGATGGAAATGTATATTTCTCAGATGCAAGCACCAAGTTTGGAGCTGACAGATTCTTTCTCGATCTTTTGGAAGCAAAACCCCATGGCAGGCTTCTGAAATATGATCCAATAACAAAGAAGACTACGGTTTTACTTGATGGTCTTGGGTTTGCAAATGGAGTTGCTCTTTCATCAGAGGAAGACTACATCCTCATATGTGAGACATGGAAGTTCAGATGCCTAAAACATTGGATCAAAGGGGAGAAGCTTGGAAGCACAGAAATCTTCATAGAAAATTTGCCTGGAGGTCCTGACAACATCAATATCGCCGCAGACGGGCAGTCATACTGGATTGCTCTCATAGGGCGGATACGTTCGAGACCACTGGAATTTGTGTATAGGTATGGGATCTTGAAGCATATATTTGCAACATATCCATATCTGTTGGAATGGATTGGATTTCAGAAGAACCAGGCTATGGTGGTGAAGGTGGGAGAGGAGGGTGAACCCATCATAAGTTTTGACGATTCCAACGGGAAGGTTATGTCATTGGTTACGTCTGCTATGGAGGTGGGAGACTATCTTTACCTGGGCAGCCTCAAAGCCAATTTTCTTGGCCGATTAAGTGCAGATA

Fln Alignment:

sp_v1.1_unigene83623___NGSWEDWKMVGSTPLGLTVSKSGDVLICMPNQGLLKVNDDQIFLLASEVDGIPIRLANAVVEASDGNVYFSDASTKFGADRFFLDLLEAKPHGRLLKYDPITKKTTVLLDGLGFANGVALSSEEDYILICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGQSYWIALIGRIRSRPLEFVYRYGILKHIFATYPYLLEWIGFQKNQAMVVKVGEEGEPIISFDDSNGKVMSLVTSAMEVGDYLYLGSLKANFLGRLSAD
B8LN24_______________NGSWEDWKMVGGAPLGLTVSTSGDVLVCMPNQGLLKVNDDRIFLLASEIDGVPIRFANTVVEASDGSVYFSDSSTKYG--KFFLDLLEAKPYGRLLKYDPITKKTTVLLDGLGFANGVALSSKEDYIIICETWKFRCLKHWIKGEKLGSTEIFIENLPGGPDNINIAADGRSYWIALVGRIRSRTLEFVYRYGILKHIFATYPNLLEWIGFQKRQAMVVKVGEHGQPITSLDDSNGKVMSLVTSAMEVGDYLYLGSLHANFLGRLSAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain