SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83606

Length: 1228 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene83606 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	asparaginyl-tRNA synthetase (EC:6.1.1.22); K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Asparagine--tRNA ligase.	EC:6.1.1.22	-	0.0	68%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Aminoacyl-tRNA biosynthesis	00970		0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	ligase activity	GO:0016874	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	82%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	82%
Blast2go	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg: your sequence is shorter than subject: 409 - 566

Fln protein: GRPDGGAGLVGAAVTVGGWVKSGREVGKTSFAFLDLNEGSCPPNVQARVPLCLRSLMRLVVGNTNGNPTPGATDGGAEPKPNGNGNHGSAAAEAAPNPTPGRTIAGQAHLQLNDGSCSTNLQVVVDASVATLGQLTPTGTSILVEGVLRKAAEGTKNKVELKVEKVLQVGTVDPAKYPISRTRLPLEFLRNYVHLRPRTNTDGMNCAEDYLKFTCQWLLENCIDDMKFMSKQFDKNAIDRLRQVASTPFARITYNEAIELLKKVPEKKFEIKVEMGMDLAPEHERYLPEEIFKKPVIVYNYPKENKPFYVRLNDDGKTVASMEVLVPKIGGIISGSQREERYEVIEKRIQELGLSKEPYEWYLDLRRFGTVKHTGFGLGFERTVLFATGLDSIKDAIPFPRVHGRAHP*

Protein Length: 410

Fln nts: GGCCGCCCTGACGGTGGCGCTGGGCTGGTGGGAGCGGCAGTGACAGTGGGTGGCTGGGTGAAGAGCGGGCGGGAGGTGGGGAAGACCAGTTTTGCTTTCTTGGATCTGAACGAAGGCTCCTGCCCGCCCAATGTGCAGGCGCGTGTTCCGCTCTGTCTGCGTTCGCTCATGAGACTGGTGGTGGGAAATACCAATGGCAACCCCACTCCCGGTGCCACTGATGGAGGAGCTGAGCCCAAGCCCAATGGGAATGGGAATCATGGCAGTGCCGCTGCAGAAGCTGCACCCAACCCAACACCTGGAAGGACCATTGCTGGTCAAGCACATTTGCAGCTCAATGATGGTTCTTGCTCTACAAATCTCCAGGTTGTAGTTGACGCTTCGGTTGCCACTCTCGGCCAGCTGACACCTACTGGAACGAGTATTCTAGTGGAAGGGGTCCTGAGAAAAGCAGCAGAAGGAACAAAGAATAAGGTGGAACTAAAAGTTGAGAAGGTTTTGCAAGTTGGAACGGTGGATCCTGCCAAGTATCCAATTTCAAGGACGCGGCTGCCACTGGAATTCCTCAGAAACTATGTTCACCTCCGCCCTAGAACAAACACGGATGGCATGAACTGTGCTGAGGACTACCTGAAATTCACATGTCAATGGCTTCTGGAGAACTGCATCGATGATATGAAATTCATGTCAAAACAGTTTGACAAGAATGCAATTGATCGTCTTCGTCAGGTGGCCTCAACACCTTTTGCAAGGATTACCTACAACGAAGCAATTGAACTCCTCAAGAAGGTTCCAGAGAAAAAGTTTGAGATCAAAGTTGAGATGGGTATGGATTTAGCCCCAGAGCATGAGAGATATTTACCCGAGGAAATTTTCAAAAAACCAGTAATTGTCTATAATTATCCAAAAGAAAACAAGCCGTTCTACGTGCGTCTAAATGATGATGGTAAAACAGTTGCTTCCATGGAGGTGCTTGTACCAAAGATTGGAGGAATTATAAGTGGAAGTCAAAGAGAGGAGCGTTATGAAGTCATTGAAAAAAGGATTCAAGAGCTAGGATTGTCAAAAGAGCCATATGAATGGTATCTGGACCTACGCAGATTTGGGACTGTTAAACATACAGGATTTGGCCTCGGCTTTGAACGCACAGTGCTTTTCGCCACCGGTTTAGATAGCATAAAAGATGCCATTCCTTTCCCCAGAGTTCATGGAAGAGCACATCCTTAA___A

Fln Alignment:

sp_v1.1_unigene83606___LLENCIDDMKFMSKQFDKNAIDRLRQVASTPFARITYNEAIELLKKVPEKKFEIKVEMGMDLAPEHERYLPEEIFKKP----VIVYNYPKENKPFYVR-LNDDGKTVASMEVLVPKIGGIISGSQREERYEVIEKRIQELGLSKEPYEWYLDLRRFGTVKHTGFGLGFERTVLFATGLDSIKDAIPFPRVHGRAHP
A9NX07_______________LNEHCKKELHAINQQYPFEPLKYLRKTL-----RLTFQEGVQMLKEAG-----IEVDPLGDFNTETERKLGGLVREKYDTDFYILHRYPLAVRPFYTMPCIDDPLYSNSFDVFI-RGEEIISGAQRVHEPEFLTKRAKELGIDVNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFPRDPQRLAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain