SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83484

Length: 1052 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene83484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S6, putative; K02991 small subunit ribosomal protein S6e	-	-	82%
FL-Next	sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	95%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU91

Fln msg: atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 237 - 253

Fln protein: LEIDDDQKLRAFYDKRLSQEVNGDALGDEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRKGERRRKSVRGCIVSQDLSVLNLVIVKKGENDLPGLTDIERPRMRGPKRASKIRKLFNLSKDDDVRQYVNTYRRTFVTKSGKKCSKAPKIQRLVTPLTLQRKRSRIAEKRKRVAKAKSEAAEYQKLLATRLKEQRDRRSESLAKKRATRLSSTASKPSSTD*

Protein Length: 238

Fln nts: TTGGAAATTGATGATGATCAGAAACTCCGTGCATTCTATGACAAAAGACTTTCCCAGGAGGTCAATGGAGATGCCCTTGGTGACGAATTCAAGGGCTATGTCTTCAAAATTATGGGAGGATGTGACAAGCAGGGATTTCCCATGAAACAAGGAGTCCTTACTCCAGGCCGAGTTAGACTCTTGTTGCACAGAGGTACACCTTGCTTCCGGGGGTATGGCAGGCGTAAGGGAGAGCGAAGACGTAAATCAGTGAGAGGATGCATTGTGAGCCAGGATCTGTCTGTATTGAACTTAGTTATTGTGAAAAAGGGTGAAAATGATCTTCCTGGTCTCACTGACATTGAAAGGCCGAGGATGAGGGGGCCCAAGAGGGCATCTAAGATAAGGAAGTTGTTCAACCTTTCAAAGGATGATGACGTGCGACAATATGTTAACACTTACCGTCGAACTTTTGTAACAAAATCAGGTAAGAAATGCAGCAAGGCACCTAAGATTCAGAGACTGGTGACTCCCCTAACACTGCAAAGGAAGCGCAGTAGAATTGCAGAAAAGAGGAAGCGGGTTGCTAAAGCCAAGTCAGAGGCAGCTGAATACCAGAAGCTCCTTGCAACGAGGTTGAAAGAACAGCGCGACCGTAGAAGTGAGAGTTTGGCAAAGAAGAGAGCAACCCGCTTATCTTCAACTGCATCAAAACCATCTTCTACGGACTAA___GCAATAATTCTGATTAAAGAGGAAGGATGTGTTTCTCTATACGGAGCTGAGTTTTTTTCTCCATAGTTAAGTAGTTCACTAGCTATAGTGAGAAAGTAGTTCACTCGCTATAGTGAGATAGTGAGAATGCGGATATTTGAATTATGGATGTTTGAGCAGAGTTTTTAATGATTTAGTGGTTTTGAACTTCTTTTCGAGAAGCTAGTCTCTTGTTTTCTTTGGCTAGTAGTTGGTTAGGATACTAGTCTCTTTCTGTAATAAATGCAAGATTTTTGTAAACGTTATTGGAGTGCTGGGTGTCGTACTGTTACGAAGAGCAAATAATAAATGAATACTATATA

Fln Alignment:

sp_v1.1_unigene83484___LEIDDDQKLRAFYDKRLSQEVNGDALGDEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSQDLSVLNLVIVKKGENDLPGLTDIERPRMRGPKRASKIRKLFNLSKDDDVRQYVNTYRRTFVTKSGKKCSKAPKIQRLVTPLTLQRKRSRIAEKRKRVAKAKSEAAEYQKLLATRLKEQRDRRSESLAKK--RATRLSSTASKPSST
A9NU91_______________LEIDDDQKLRAFYDKRLSQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGFGRRKGERRRKSVRGCIVSQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLTKDDDVRKYVNTYRRTFVTKSGKKCSKAPKIQRLVTPLTLQRKRSRIAEKKQRVAKAKLEAAEYQKLLATRLKEQRDHRSESLAKKRDRATRLSSAASKPSST

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain