SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83393

Length: 563 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene83393
TCATGCCTTTCAGGACTCCATCATCTCCGAGTTTGGACTGCCCAGAGCTTGGCTTCTAGTGCTGCATCCTCCATGACAGCTTGGGCCCTCACACTACTCGCCATGGGGTTAGCATGCAAGGAGATCCATATAGGCGGGCGAAACACAAAGCTGATAACGTTGGAATCCTTCCTTATAATTCTGTGTGGAACAAAGCTCTGGTACATCTTACTCATTCATGGTGGATTCTTCGGAGGGAATTATTGTTGTTACGAGGACACCTACATAGCCACAACTACAACTAGAGCCGAGCCTCAGAAAGGAAGCACAACTGTGACTTCTTCGGTTTAACAGCTGTTATCTTGTAATGTAATCTATCAGGATTTGATTAATGCCTTTTGTTGTTAGTGACTAGAAAATTAATTCTTAGGAGAGAAAATCAGGTCTGGACTTGAGAGGAAATGTGTAATTATTTTGTGCAAACTGCAGGTTTAACGAGTTGGATCCAATTTGTGTATGAGTTGCAGTTTTGTAATATGTAAATCGTCGTTTCTTCTTATTATGGAAATATATGTTTCTCTTAC

Ace file of the UniGene sp_v1.1_unigene83393 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative hydrophobic LEA-like protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX92_PINPS	-	-	6.0e-23	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	hydrophobic lea-like protein	-	-	1.01481e-35	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADM0

Fln msg: your sequence is shorter than subject: 110 - 189

Fln protein: SCLSGLHHLRVWTAQSLASSAASSMTAWALTLLAMGLACKEIHIGGRNTKLITLESFLIILCGTKLWYILLIHGGFFGGNYCCYEDTYIATTTTRAEPQKGSTTVTSSV*

Protein Length: 111

Fln nts: TCATGCCTTTCAGGACTCCATCATCTCCGAGTTTGGACTGCCCAGAGCTTGGCTTCTAGTGCTGCATCCTCCATGACAGCTTGGGCCCTCACACTACTCGCCATGGGGTTAGCATGCAAGGAGATCCATATAGGCGGGCGAAACACAAAGCTGATAACGTTGGAATCCTTCCTTATAATTCTGTGTGGAACAAAGCTCTGGTACATCTTACTCATTCATGGTGGATTCTTCGGAGGGAATTATTGTTGTTACGAGGACACCTACATAGCCACAACTACAACTAGAGCCGAGCCTCAGAAAGGAAGCACAACTGTGACTTCTTCGGTTTAA___CAGCTGTTATCTTGTAATGTAATCTATCAGGATTTGATTAATGCCTTTTGTTGTTAGTGACTAGAAAATTAATTCTTAGGAGAGAAAATCAGGTCTGGACTTGAGAGGAAATGTGTAATTATTTTGTGCAAACTGCAGGTTTAACGAGTTGGATCCAATTTGTGTATGAGTTGCAGTTTTGTAATATGTAAATCGTCGTTTCTTCTTATTATGGAAATATATGTTTCTCTTAC

Fln Alignment:

sp_v1.1_unigene83393___SCLSGLHHLRVWXXXXXXXXXXXXXXXXXXXXXXXXXACKEIHIGGRNTKLITLESFLIILCGTKLWYILLIHGGFFGGNYCCYEDTYIATTTTRAEPQKGSTTVTSSV
D5ADM0_______________SCLSGLHHLRVWTAQSLAPSTASSMTAWALTLLAMGLACKEIHIGGRNAKLITLESFLIILCGTKLFYILLIHGGFFGGNYCSYQDTYVATTTTTAEPLKGSTTVVSSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain