SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83367

Length: 449 nt

UniGene Fasta

>sp_v1.1_unigene83367
TGATAAGCATCTGGAAGGGTGGACTGAAGTGGCAAAAGAGCTTGCCTACAGATTGCGAGCACTCATGGAATTGTGCATTCTTCTTCCAGGAAGTTCTCCACATAATCACCAATATCAAACTATGGAAGGCATACCAAATAAATCGGAAGTTTGGCCAGCTTCATGGGAATGCTCTGAGGAAGCTTTTGCCCAGCGAATCAAACAACAAGATCCACTTAAACTAGGGTTTCCTAATATTTGGGCTCTGCGCCTGGTCCGTCAGCTGTTGCAGTGGCATCCTGAGGATCGTATATCTGCAACAGATGCTCTTCGGCATCCATATTTTATGAAAGTCGAGAATGAGGACCTCATATGAAAAGCAGCCTGATGTTCAGTTGATGCGATTTGCGGATTACTTTGCACAGCCATTTAGTTTGGTCAACTCTGCCCAATTCCCTCTGAACAAGATA

Ace file of the UniGene sp_v1.1_unigene83367

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein	-	-	7.0e-20	55%
FL-Next	sp=Probable inactive protein kinase At3g63330; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	protein	-	-	2.19986e-32	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	2.19986e-32	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	2.19986e-32	71%
Blast2go	Protein phosphatase 2C	IPR015655	-	2.19986e-32	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RXY0

Fln msg: your sequence is shorter than subject: 118 - 376

Fln protein: DKHLEGWTEVAKELAYRLRALMELCILLPGSSPHNHQYQTMEGIPNKSEVWPASWECSEEAFAQRIKQQDPLKLGFPNIWALRLVRQLLQWHPEDRISATDALRHPYFMKVENEDLI*

Protein Length: 119

Fln nts: TGATAAGCATCTGGAAGGGTGGACTGAAGTGGCAAAAGAGCTTGCCTACAGATTGCGAGCACTCATGGAATTGTGCATTCTTCTTCCAGGAAGTTCTCCACATAATCACCAATATCAAACTATGGAAGGCATACCAAATAAATCGGAAGTTTGGCCAGCTTCATGGGAATGCTCTGAGGAAGCTTTTGCCCAGCGAATCAAACAACAAGATCCACTTAAACTAGGGTTTCCTAATATTTGGGCTCTGCGCCTGGTCCGTCAGCTGTTGCAGTGGCATCCTGAGGATCGTATATCTGCAACAGATGCTCTTCGGCATCCATATTTTATGAAAGTCGAGAATGAGGACCTCATATGA___AAAGCAGCCTGATGTTCAGTTGATGCGATTTGCGGATTACTTTGCACAGCCATTTAGTTTGGTCAACTCTGCCCAATTCCCTCTGAACAAGATA

Fln Alignment:

sp_v1.1_unigene83367___DKHLEGWTEVAKELAYRLRALMELCILLPGSSPHNHQYQTMEGIPNKSEVWPASWECSEEAFAQRIKQQDPLKLGFPNIWALRLVRQLLQWHPEDRISATDALRHPYF
Q8RXY0_______________DQHIRGWSENFKELAYKLRSLMEMCILIPGSSLKHGGASSKQG-----GISLASWKCSEEFFAEQIKSRDPLKIGFPNVWALRLVRGLLQWYPEDRVTVDEALQHPYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain