SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83333

Length: 477 nt

UniGene Fasta

>sp_v1.1_unigene83333
TCGCGGGGACCGTCGCGGCGGCCGGCGAGGAGCCCGAAGAGACGAAGAAGAAAAATGGGTGCCCGTGACGAAACTTGGCCGCCTGGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTTTCGTTGGCTGTGAAGGAGCACCAGATTGTGGAGGCCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAGATCATGCCTGTGCAGAAGCAGACGAGGGCCGGGCAGAGGACTCGATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACGTAGGGCTTGGGGTCAAGTGCAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGGAAGCCGCATACTGTGCCTGTTAAGGTCACAGGGAAGTGCGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGC

Ace file of the UniGene sp_v1.1_unigene83333

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S2, putative n=2 Tax=Ricinus communis RepID=B9RIB2_RICCO	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	90%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S5	IPR000851	-	90%
Blast2go	Ribosomal protein S5, C-terminal	IPR005324	-	90%
Blast2go	Ribosomal protein S5, eukaryotic/archaeal	IPR005711	-	90%
Blast2go	Ribosomal protein S5, N-terminal	IPR013810	-	90%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	90%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	90%
Blast2go	Ribosomal protein S5, N-terminal, conserved site	IPR018192	-	90%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMF2

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 158 - 270

Fln protein: RGDRRGGRRGARRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVA

Protein Length: 159

Fln nts: TCGCGGGGACCGTCGCGGCGGCCGGCGAGGAGCCCGAAGAGACGAAGAAGAAAAATGGGTGCCCGTGACGAAACTTGGCCGCCTGGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTTTCGTTGGCTGTGAAGGAGCACCAGATTGTGGAGGCCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAGATCATGCCTGTGCAGAAGCAGACGAGGGCCGGGCAGAGGACTCGATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACGTAGGGCTTGGGGTCAAGTGCAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGGAAGCCGCATACTGTGCCTGTTAAGGTCACAGGGAAGTGCGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGC

Fln Alignment:

sp_v1.1_unigene83333___EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR-------GKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVA
A9NMF2_______________EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain