SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene83292

Length: 420 nt

UniGene Fasta

>sp_v1.1_unigene83292
ATCAAGTTGCAGTGAAGAGGCTTAGGGAGCGAATAGCAAAGAGTCAAAGAGAATTTGAGACAGAAGCTAATGCTCTTGGGAAGATCAGGCATCTTAATTTGACTTCATGCCTAGTGGAAACCTTGCAGCATTCCTTCGTGCAAGAAGCACAGAGACACCTTTGAATTGGCACACCAGAATGGAAATTGCAATTCGTGCAGCGCAAGGACTTGCTTATCTACACATCAATGAGAACATCATTCATGGAAATGTCACTTCCAGCAACATCCTGTTTGATGCAAACTTGAATGCCAAGATTGCAGATTTTGGCTTGTCTAGGTTGATGACAACAGCTGCCAATTCCAATGTTATTGCCACAGCAGGAGCTCTTGGATACAGGGCTCCAGAGCTCACAAAACTGAAGAAAGGCACCACCAAGAC

Ace file of the UniGene sp_v1.1_unigene83292

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulation receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9S479_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	receptor-like kinase	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	81%
Blast2go	Protein kinase-like domain	IPR011009	-	81%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 150 aas, your sequence is shorter than subject: 54 - 340

Fln protein: QVAVKRLRERIAKSQREFETEANALGKIRHLNLTSCLVETLQHSFVQEAQRHL*

Protein Length: 55

Fln nts: ATCAAGTTGCAGTGAAGAGGCTTAGGGAGCGAATAGCAAAGAGTCAAAGAGAATTTGAGACAGAAGCTAATGCTCTTGGGAAGATCAGGCATCTTAATTTGACTTCATGCCTAGTGGAAACCTTGCAGCATTCCTTCGTGCAAGAAGCACAGAGACACCTTTGAATTGGCACACCAGAATGGAAATTGCAATTCGTGCAGCGCAAGGACTTGCTTATCTACACATCAATGAGAACATCATTCATGGAAATGTCACTTCCAGCAACATCCTGTTTGATGCAAACTTGAATGCCAAGATTGCAGATTTTGGCTTGTCTAGGTTGATGACAACAGCTGCCAATTCCAATGTTATTGCCACAGCAGGAGCTCTTGGATACAGGGCTCCAGAGCTCACAAAACTGAAGAAAGGCACCACCAAGAC

Fln Alignment:

sp_v1.1_unigene83292___VAVKRLRERIAKSQREFETEANALGKIRHLNL
B8LN40_______________VVVKRLKD-VAANRKDFEQQMELVGRIRHRNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain