SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82703

Length: 556 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene82703
CGTCGTGACCTTGGCTGTCACTCAAACTGTAAAGATAGAAGGACATATCAAGAAGAAAAAGGTAATAGTGTTGATTGATTCGGGTAGTACCCATAATTTTATTAATTGTAATATAGCCAAGGACTTGAATTGCTTCCTAGATCCAACACCAGAGTATCAAGTGATGGTTGAAAGTGGAAGAACCATAAATTGCTCTAGAAAGTGCCATAATATAAAGCTATACATGGGAGAATATGTATTCAATAACCCAATGCTTTCCATTCCAATGGGTAGTGATAATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAATTTTCAAGAAATTTTCATGAAATTTTCTTCCGAAAGGAAAGGAAGTTGAATTAAGGGGTATCACAGGGAAATCAGGAGATATAATCAGCTCTTACGGAATGATAAATCTTCTAAAGAAATAACAAAGGGGTGTAATTGCACAATTATGTTCACTAAAGGTTCCCACATAGAAATCTTATATTTCTCCATATCTCCAAAAAGCCTTCGACAATCATTCCAAGGTATT

Ace file of the UniGene sp_v1.1_unigene82703 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558	-	-	4.0e-16	36%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	32%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	6.74819e-16	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C2E0

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 185 - 793

Fln protein: VVTLAVTQTVKIEGHIKKKKVIVLIDSGSTHNFINCNIAKDLNCFLDPTPEYQVMVESGRTINCSRKCHNIKLYMGEYVFNNPMLSIPMGSDNVVLGVQWLQSLGTIAFNFQEIFMKFSSERKGS*IKGYHREIRRYNQLLRNDKSSKEITKGCNCTIMFTKGSHIEILYFSISPKSLRQSFQGI

Protein Length: 186

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTGTAAAGATAGAAGGACATATCAAGAAGAAAAAGGTAATAGTGTTGATTGATTCGGGTAGTACCCATAATTTTATTAATTGTAATATAGCCAAGGACTTGAATTGCTTCCTAGATCCAACACCAGAGTATCAAGTGATGGTTGAAAGTGGAAGAACCATAAATTGCTCTAGAAAGTGCCATAATATAAAGCTATACATGGGAGAATATGTATTCAATAACCCAATGCTTTCCATTCCAATGGGTAGTGATAATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAATTTTCAAGAAATTTTCATGAAATTTTCTTCCGAAAGGAAAGGAAGTTGAATTAAGGGGTATCACAGGGAAATCAGGAGATATAATCAGCTCTTACGGAATGATAAATCTTCTAAAGAAATAACAAAGGGGTGTAATTGCACAATTATGTTCACTAAAGGTTCCCACATAGAAATCTTATATTTCTCCATATCTCCAAAAAGCCTTCGACAATCATTCCAAGGTATT

Fln Alignment:

sp_v1.1_unigene82703___QTVKIEGHIKKKKVIVLIDSGSTHNFINCNIAKDLNCFLDPTPEYQVMVESGRTINCSRKCHNIKLYMGEYVFNNPMLSIPMGSDNVVLGVQWLQSLGTIAFNFQEIFMKFSSERKGS*IKGYHREIRRYNQLLRNDKSSKEITKG
A5C2E0_______________KTMRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRFEHVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQGTNTQTIQVASL---KAVSKELRQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain