SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82665

Length: 422 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene82665
TGTCGTAAATTGTTGCTTTTGCTGAATGCACAGAAAACTAGTTAGGGTCAACGAGAACATCTATATGAAACCCTAAGAAAGCTACTCAAGTTTCCTGTGAAGGCAGTTGCAGATATTGTGGTGACAATTGTGCAATTTGCAGAAACCACATTATGGACCTCTGCATTGAGTGCCAGGCAAATCAAGCAAGTGCTACCAGTGAAGAATGTGCTGTTGCATGGGGTGGCTGCAATCATGCCTTCCACTTCCATTGCATAAGTCGTTGGCTTAAGACAAGACAAGTCTGCCCATTAGATAATAGCGAGTGGGAGTTCCAGAAGTACGGACATTAGAGTGGATATGACTGTTCATCAATTATTTACTTAAGTGATAGCTTTTGTTGTGATCTATCGAATGTCTGAAAGGAGAATGTTGGCTTTGCA

Ace file of the UniGene sp_v1.1_unigene82665

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hyperosmotic protein 21; K03868 RING-box protein 1	-	-	1.0e-36	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	8.68839e-37	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	8.68839e-37	97%
Blast2go	protein binding	GO:0005515	Molecular Function	8.68839e-37	97%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	8.68839e-37	97%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	8.68839e-37	97%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P251

Fln msg: atg_distance in limit (1-15): atg_distance = 11, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 88 - 119

Fln protein: NPKKATQVSCEGSCRYCGDNCAICRNHIMDLCIECQANQASATSEECAVAWGGCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*

Protein Length: 89

Fln nts: TGTCGTAAATTGTTGCTTTTGCTGAATGCACAGAAAACTAGTTAGGGTCAACGAGAACATCTAT_-_ATGAAACCCTAAGAAAGCTACTCAAGTTTCCTGTGAAGGCAGTTGCAGATATTGTGGTGACAATTGTGCAATTTGCAGAAACCACATTATGGACCTCTGCATTGAGTGCCAGGCAAATCAAGCAAGTGCTACCAGTGAAGAATGTGCTGTTGCATGGGGTGGCTGCAATCATGCCTTCCACTTCCATTGCATAAGTCGTTGGCTTAAGACAAGACAAGTCTGCCCATTAGATAATAGCGAGTGGGAGTTCCAGAAGTACGGACATTAGAGTGGATATGACTGTTCATCAATTATTTACTTAAGTGATAGCTTTTGTTGTGATCTATCGAATGTCTGAAAGGAGAATGTTGGCTTTGCA

Fln Alignment:

sp_v1.1_unigene82665___DNCAICRNHIMDLCIECQANQASATSEECAVAWGGCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
A9P251_______________DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
150		66		33	0.997454
151	66		33		0.997452
152			33	66	0.997453
153			33	66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain