SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82609

Length: 1091 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene82609 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	expansin-like 3 precursor	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	68%
Blast2go	Barwin-related endoglucanase	IPR009009	-	68%
Blast2go	Barwin-like endoglucanase	IPR014733	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg: Separated hits, possible frame ERROR between 678 and 749, your sequence is longer than subject: 341 - 274

Fln protein: MGTLITPHCPFVPQSRSASFDEEIIIMKIFNNPLLFAVWMLSMVSAALSCDRCLHKSKVASFARANINGACGYGNSATSLTARGGLVMASASAKIYREGVGCGACYQIRCTDPGVCTKSGVKVLVTDFTKSTQTDFVLSARSFSKLAVPSKAAQFLKMGTVDVDYKRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITEVDIDPI*TSIFSEVNISNGxxxxxxxxxxxxxxxxxxxxxxxxxKVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTSVNLL*

Protein Length: 342

Fln nts: _-_ATGGGGACACTGATTACTCCTCATTGCCCTTTTGTTCCCCAGAGTCGATCCGCTTCATTTGACGAAGAAATTATTATAATGAAGATTTTCAATAATCCTCTGCTGTTTGCAGTATGGATGCTATCTATGGTTTCCGCAGCATTATCTTGTGACCGCTGCCTTCACAAATCCAAAGTCGCCTCTTTCGCTCGGGCTAATATTAATGGCGCATGTGGATATGGGAACTCTGCAACAAGCTTAACTGCTCGTGGAGGGCTGGTCATGGCAAGCGCAAGTGCCAAAATATACAGAGAAGGCGTAGGATGCGGCGCCTGCTATCAGATAAGATGCACAGATCCAGGCGTTTGCACCAAATCTGGAGTGAAAGTTTTGGTTACAGACTTCACAAAAAGCACTCAGACAGATTTTGTTCTTTCCGCTCGCAGTTTCTCGAAACTGGCAGTACCTAGCAAAGCTGCTCAATTTCTCAAGATGGGAACCGTGGATGTAGACTATAAACGAATTCTCTGTGACTATGGAAGCCAAAACATGACTGTGAAAGTAGACAAAAGCAGTAAATATCCAGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGAGGTAGACATTGACCCGATTTAAACAAGTATATTTTCTGAAGTGAACATATCCAACGGGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAAGGTGGGATCATCAGGTTGGCAGTATATGACCCGCAAAAACGGTGCAATTTGGGGCATTCAGAATCCTCCCATAGGTTCCCTGTCGTTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCAGGCTCTGTTTATGAATCTGGAGTTCAGATCACAGAAATTGCGCAAGAAGGCTGTAGTCCCTGCGAAACTGGCAACTGGACTGACACATCTGTTAATTTATTGTGA___TAATCCACAGTGGAGTAGAGCAATTGTTTGAGGCATAGGACTGAGAGTTGTTTCTAATTGGCTAGCATAG

Fln Alignment:

sp_v1.1_unigene82609___MKIFNN--PLLFAVWMLSMVSAALSCDRCLHKSKVASFARANINGACGYGNSATSLTARGGLVMASASAKIYREGVGCGACYQIRCTDPGVCTKSGVKVLVTDFTKSTQTDFVLSARSFSKLAVPSKAAQFLKMGTVDVDYKRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITEVDIDPI*TSIFSEVNISNGSxxxxxxxxxxxxxxxxxxxxxxxxKVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTSVN
A9NMA2_______________MKILHKIQQLRFAIWMLFMVSAALSCDRCLHKSKVASDARANINGACGYGTSATSLTTRGGLVTASASAKIYREGVGCGACYQIRCTDPGVCSKSGVKVLVTDFTKNTQTDFVLSARSFSRLAVPSKAAQFLKMGTVDVDYKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITAVEVDQVGSSGWQYMTRNQGAxxxxxxxxxxxxxxxxxxxxxxxxQVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYVN

SNPs (tot: 5)

Position	A %	C %	G %	Probability
1002	62		37	1.0
1064	14		71	0.984337
1067		20	80	0.995493
1082		33	66	0.997452
1085	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain