SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82582

Length: 1156 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene82582

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Translation initiation factor eIF-3b	IPR011400	-	90%
Blast2go	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	90%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	90%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg: Separated hits, possible frame ERROR between 745 and 885, STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 385 - 724

Fln protein: VVTLAVTHFSWSPTDPILALFVLVGGGGNQPAKVSLVQIPGMEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQELRDGEPSDEEEEYEAEEVEVEEIVDVTEEISF

Protein Length: 386

Fln nts: CGTCGTGACCCTGGCTGTCACTCATTTCAGTTGGTCTCCAACAGATCCAATACTAGCCTTGTTTGTGCTAGTGGGAGGTGGGGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAtGGAgGAACTGAGACAAAAAAATCTCTTCAGTGTAAGTGATTGCAAAATGTACTGGCAAAGCAATGGAGACTACTTGGCAGTCAAAGTGGATCGCTATACCAAGACAAAAAAAAGTACATACACAGGTTTTGAACTTTTCCGAATTAAGGAAAGAGATATTCCCATAGAGGTCCTGGAATTAGAGAACAAAAATGACAAGATCATTGCATTTGCTTGGGAGCCCAAAGGCCACAGGTTTGCTATTATCCATGGGGATGGACCCAGGCCAGATGTTAGTTTCTATTCAATGAGGAGCCCTAATCATGTGGGCCGGGTTTTCAAGCTGGCTACCATCAAAGGAAAACAAGCAAACTCCCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGTCTAAAAGCTTTAAATGGTCAGCTTGAATTTTACAATGTCGATGAATTGGAGACAATGGCAACTGGTGAACACTTCATGGCAACTGATATTGAGTGGGATCCTACTGGAAGATATGCTGCAACAGCAGTTACATCTGTGCATGAAATGGAAAATGGGTTTAACATATGGTCTTTCAATGGAAAGCTATTGTACCACGTTTCAAGAGATCATTTCTACCAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCGCTAAGAATTTGAGGAAGTATAGTAAGAAGTATGAGGCTGAAGACCAGGATGTTTCGTTATTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAAATTACAAGAGGATTGGCAGGTCTGGGTCAATGAATGGAAACGTTTTCACGAGGAAGAGAAATTATTTAGACAGGAGCTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGATCGTAGACGTTACTGAAGAGATTAGCTTCTA

Fln Alignment:

sp_v1.1_unigene82582___VTHFSWSPTDPILALFVLVGGGGNQPAKVSLVQIPGMEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNHVGRVFKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTSVHEMENGFNIWSFNGKLLYHVSRDHFYQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAKNLRKYSKKYEAEDQDVSLLLSEQDREKRKKLQEDWQVWVNEWKRFHEEEKLFRQ
A9NWV8_______________VMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
495		50		25	0.995533
840		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain