SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82576

Length: 256 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene82576
CGTCGTGACCTTGGCTGTCACTCAGTATTTTATGTTCGTCGCAACTATGGCTCCAAAGGCAGACAAGAAAGTCACTGAGAAGAATTCCATTGCAGAGAAGAAGCCCACTCCCAAGGCCGAGAAGAAGCTTCCAAAATAAGGCGGAGACAAGAAGGGCAAGAAGAAGCACAAGAAGAGCCTTGAGGCGTATAAGATCTATATCTTTAAGGTTCTGAAGCAAGTTCACCCAGATATTGGCATTTCTAGCAAGGCCATG

Ace file of the UniGene sp_v1.1_unigene82576

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.5 n=3 Tax=Poaceae RepID=H2B5_WHEAT	-	-	5.0e-07	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXC7

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 75 - 135

Fln protein: MFVATMAPKADKKVTEKNSIAEKKPTPKAEKKLPK*GGDKKGKKKHKKSLEAYKIYIFKVLKQVHPDIGISSKAM

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTT_-_ATGTTCGTCGCAACTATGGCTCCAAAGGCAGACAAGAAAGTCACTGAGAAGAATTCCATTGCAGAGAAGAAGCCCACTCCCAAGGCCGAGAAGAAGCTTCCAAAATAAGGCGGAGACAAGAAGGGCAAGAAGAAGCACAAGAAGAGCCTTGAGGCGTATAAGATCTATATCTTTAAGGTTCTGAAGCAAGTTCACCCAGATATTGGCATTTCTAGCAAGGCCATG

Fln Alignment:

sp_v1.1_unigene82576___MAPKADKKVTEKNSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEAYKIYIFKVLKQVHPDIGISSKAM
A9NXC7_______________MAPKAEKKPAEKKPVAEKKSAPKAEKKLPKEGGDKKGKKKHKKSVETYKIYIFKVLKQVHPDIGISSKAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain