SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82572

Length: 1058 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene82572 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Granule-bound starch synthase n=2 Tax=Nelumbo nucifera RepID=B5THH5_NELNU	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	granule-bound starch synthase	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Starch synthase, catalytic domain	IPR013534	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTH1

Fln msg: Overlapping hits, possible frame ERROR between 376 and 370, and overlapping frame ERROR between 690 and 678, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 182 aas, your sequence is shorter than subject: 329 - 622

Fln protein: IRCSVTQLESF*NKLARERLKPWNDVVCYVLLKYLVLLQARGHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELxxxxLCQAAIKAPRILNLSSSEHFSGPRRDLAVIIANDWHTSLLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFAFSDFSLLNLPDSFKSSFDFIDGYAKxxxxxxxNWMKAGILESDRVLQ*VHIMQRSL*LDRTRELNWNLLFAKLALQEL*MEWISKNGTLQRTNISK*TMMQRLL*MPSLV*RKLYKLKLG*PWIQIFLL*

Protein Length: 330

Fln nts: AATTCGCTGCAGTGTTACACAATTGGAATCGTTCTAGAATAAGTTGGCCAGGGAACGACTGAAGCCCTGGAATGATGTTGTTTGTTATGTACTATTAAAATACTTGGTCTTGTTGCAGGCACGTGGTCATCGGGTTATGACAGTATCCCCACGTTATGATCAGTATAAGGACTCATGGGATACCAACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTTGAAAAGGTTTGGGGGAAAACAGGCGGAAAGATTTATGGTCCTCAAACTGGGGTGGACTACCAAGACAATGAACTTxxxxxxxxxxxxCTATGTCAGGCAGCTATTAAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTCGTCGTGACCTTGCTGTCATCATTGCCAATGATTGGCATACATCTCTTCTTCCTTGTTACTTGAAGAGTATCTACAAGCCTGCCGGTTCTTTCACAAATGCCAAGGTTGCATATTGCATACACAATATAGCCTATCAAGGGAGATTTGCTTTCTCAGACTTCTCTCTTCTTAATCTTCCCGATTCGTTCAAGAGCTCATTTGATTTCATAGATGGGTATGCCAAACCxxxxxxxxxxxxxxxxxxAAATTGGATGAAAGCTGGAATACTAGAATCTGATAGGGTTTTACAGTGAGTCCATATTATGCAAAGGAGCTTATAACTGGACCGGACAAGGGAGTTGAATTGGAATCTATTGTTCGCAAAGTTGGCATTACAGGAATTGTGAATGGAATGGATATCCAAGAATGGGACCCTTCAACGGACAAATATCTCGAAGTGAACTATGATGCAACGACTGTTGTAGATGCCAAGCCTAGTCTGAAGGAAGCTCTACAAGCTGAAGTTGGGCTGACCGTGGATCCAGATATTCCTGTTATAGGATTTATTGGAAGACTTGAAGAGCAGAAAGGTCCAGATACTTCTTAAAGCTGAAGCTGTCCCTCTAATTGCA

Fln Alignment:

sp_v1.1_unigene82572___ARGHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELRxxLLCQAAIKAPRILNLSSSEHFSGPRRDLAVIIANDWHTSLLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFAFSDFSLLNLPDSFKSSFDFIDGYAKPVxxxxINWMKAGILESDRV
C0PTH1_______________ARGHRVMTVSPRYDQYKDSWDTGVSIDIKVGDKTESVRFFHIYKRGVDRIFVDHPWFLEKVWGKTGGKIYGPETGVDYKDNELRxxLLCQAAIEAPRILNLSSSEHFSGPYGEDVVFIANDWHTALLPCYLKSIYKPAGSFTNAKVAYCIHNIAYQGRFSFSDFSLLNLPDEFKSSFDFIDGYAKPVxxxxINWMKAGILESDRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain