SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82546

Length: 1089 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene82546

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Granule bound starch synthase Ia n=1 Tax=Malus x domestica RepID=B2LUN5_MALDO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	granule-bound starch synthase	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Starch synthase, catalytic domain	IPR013534	-	0.0	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR42

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 188 aas, your sequence is shorter than subject: 266 - 459

Fln protein: MAAAAAQHFVACQSRITNSARSRSSETALPSKNRGSSNAASSLGQIAYYQGLRSIRSRDLGQLQSHAEANFKQVLRKALSGGSKGPKGVVTCSSGMNLVFVSAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYGRFSNMSSMKQFVFLLGNFLEISRTIVP*

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCGGACTAGAACGGGCTCAGCGATTTTGTGGAGCTTAACTGTCTCACACCCCGGGACCGTCGAGTGCGAGGTAGGCCGTTTCTGAAAGTTTGCTTACTGAAATTTCTGCCTTCTGGTGATTAAAGGTTTTATTTAAATAGTGATAGTAGCGGCCTATCGTtAGAAGTTTCTTGAAGCTAATAGCTCTCTTTGAAGTTCAAGAATCGAATCTGCGTAGGATTGTAGTATCTTCTTTTTGGAGAGACAGCATATAAA_-_ATGGCCGCTGCTGCAGCTCAGCACTTTGTAGCCTGCCAGTCTCGCATTACTAATTCTGCCAGAAGTCGTTCTTCGGAGACTGCATTGCCCTCAAAGAATAGAGGGAGCAGTAATGCTGCCAGCTCACTAGGCCAAATTGCCTACTACCAGGGCCTGCGGTCGATTAGAAGCAGAGACTTGGGACAGCTTCAGAGCCATGCAGAGGCAAATTTTAAGCAAGTGTTGAGGAAGGCACTTAGTGGTGGTTCCAAGGGTCCCAAGGGAGTGGTCACTTGTAGCAGTGGGATGAATCTGGTTTTTGTATCAGCTGAAGTGGCCCCCTGGAGTAAAACTGGAGGTCTTGGTGATGTTCTAGGAGGATTGCCACCTGCGCTGGCTGCACGTGGTCATCGGGTTATGACAGTATCCCCACGTTATGATCAGTATAAGGACTCATGGGATACCAACGTAGTGGTTGATGTAAAAGTAGGTGATAGAATTGAAACTGTGCGATTCTTCCATGTTTACAAGAGGGGAGTAGATCGTGTTTTTGTGGATCACCCATCCTTCCTTGAAAAGGTTTGGGGGAAAACAGGCGGAAAGATTTATGGTCCTCAAACTGGGGTGGACTACCAAGACAATGAACTTCGTTTTAGCCTCCTATGTCAGGCAGCTATTGAAGCTCCAAGGATTCTTAATCTCTCAAGCAGTGAACACTTTAGTGGACCTTATGGTAGGTTCTCTAATATGTCGTCTATGAAACAATTTGTCTTCTTATTGGGAAATTTCTTGGAAATTTCACGTACGATAGTTCCATGATTCTATCAAATATTT

Fln Alignment:

sp_v1.1_unigene82546___QHFVACQSRITNSARSRSSETALPSKNRGSSNAASSLGQIAYYQGLRSIRSRDLGQLQSHAEANFKQVLRKALSGGSKGPKGVVTCSSGMNLVFVSAEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTVSPRYDQYKDSWDTNVVVDVKVGDRIETVRFFHVYKRGVDRVFVDHPSFLEKVWGKTGGKIYGPQTGVDYQDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYG
B8LR42_______________QHFVACQPGIANSARSPSSGTALPSKNRGSSNATCSPGQIAYYQGLRSTRSTNLGQLQSHAEANFKQVLRKALSVGPKGPKGVVTCSGGMNLVFVSAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYKDSWDTGVSIDIKVGDKTESVRFFHIYKRGVDRIFVDHPWFLEKVWGKTGGKIYGPETGVDYKDNELRFSLLCQAAIEAPRILNLSSSEHFSGPYG

SNPs (tot: 3)

Position	A %	G %	T %	Probability
210	85	14		0.993533
211		85	14	0.993533
563	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain