SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82501

Length: 347 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene82501
TATGGGGATACAGAGAAGGAGACCTACATATACAACAAGCTTATTATAGTCTTGTGACTGAATAAATATTCTTCATTGTGTTTCTACTACATTTGGGTGTCAGCAGCTCCCATGGGTTATGTAAGCAGGTTGTTAGTCTTATATGGTCATGATGATACTCTTTCTTCAGATGAACAGGAATCCTCTGCAGAATATAGACTGCAAGGTAGCATGTGGAGGAAGATGCAAAGAAGCATCTCTCCATGACCGATGTTTAAGAGCTTGTGGTACATGCTGTACCAAATGCAACTGTGTTCCTCCTGGTACATATGGAAACAAAAACCTACTGCCCCTGCTATGCCAACATG

Ace file of the UniGene sp_v1.1_unigene82501

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gibberellin-regulated protein 2	-	-	8.0e-12	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	gibberellin-regulated protein 2 precursor	-	-	5.64179e-27	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	5.64179e-27	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE82

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 109

Fln protein: MVMMILFLQMNRNPLQNIDCKVACGGRCKEASLHDRCLRACGTCCTKCNCVPPGTYGNKNLLPLLCQH

Protein Length: 69

Fln nts: TATGGGGATACAGAGAAGGAGACCTACATATACAACAAGCTTATTATAGTCTTGTGACTGAATAAATATTCTTCATTGTGTTTCTACTACATTTGGGTGTCAGCAGCTCCCATGGGTTATGTAAGCAGGTTGTTAGTCTTAT_-_ATGGTCATGATGATACTCTTTCTTCAGATGAACAGGAATCCTCTGCAGAATATAGACTGCAAGGTAGCATGTGGAGGAAGATGCAAAGAAGCATCTCTCCATGACCGATGTTTAAGAGCTTGTGGTACATGCTGTACCAAATGCAACTGTGTTCCTCCTGGTACATATGGAAACAAAAACCTACTGCCCCTGCTATGCCAACATG

Fln Alignment:

sp_v1.1_unigene82501___YMVMMILFLQM--------------------NRNPLQNIDCKVACGGRCKEASLHDRCLRACGTCCTKCNCVPPGTYGNKNLLP
D5AE82_______________YLVMMVLVLQMYVEPAEIGASTAVGLSRNRMNRNLLQNIDCKVACGGRCKEASLHDRCLRACGTCCAKCNCVPPGTYGNKNLCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain